BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0191.p
         (598 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313210|ref|YP_003777302.1| protease with the C-terminal PD...  1159   0.0  

>gi|300313210|ref|YP_003777302.1| protease with the C-terminal PDZ
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 598

 Score = 1159 bits (2999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/598 (93%), Positives = 577/598 (96%)

Query: 1   MATPIRYRITSLDPASHLYDVSVTVDSPAADGQVFSLPAWIPGSYMIREFGKNIVQLRGE 60
           MATPIRYRITSLDPASHL+DVSVTVD+PAA+GQVFSLPAWIPGSYMIREFGKNIVQLRGE
Sbjct: 1   MATPIRYRITSLDPASHLFDVSVTVDTPAAEGQVFSLPAWIPGSYMIREFGKNIVQLRGE 60

Query: 61  SNGRKVAVKKLDKHTWQAAPCKGALTLHYQVYAWDLSVRTAHLDRTHGFFNGTSVFLAAH 120
            NGRKV VKKLDKHTWQAAPCKGALTLHYQVYAWDLSVRTAHLDRTHGFFNGTSVFL AH
Sbjct: 61  CNGRKVGVKKLDKHTWQAAPCKGALTLHYQVYAWDLSVRTAHLDRTHGFFNGTSVFLCAH 120

Query: 121 GFEEGEHVVDIARPEGDDFKRWRVATAMPELKAKRYGFGTYVAPNYDALIDHPVEIGDFA 180
           GFE+GEHVV++ RPEG++FKRWRVATAM ELKAKRYGFGTYVA NYD LIDHPVEIGDFA
Sbjct: 121 GFEQGEHVVELVRPEGEEFKRWRVATAMSELKAKRYGFGTYVAQNYDELIDHPVEIGDFA 180

Query: 181 LATFQAHGVPHDVVITGRVPNLDLARLCDDLKKICEAQIAFFEPRSKRAPMNRYVFMTLA 240
           LATFQAHGVPHDVVITGRVPNLDLARLC+DLKKICEAQIAFFEPRSKRAPM+RYVFMTLA
Sbjct: 181 LATFQAHGVPHDVVITGRVPNLDLARLCEDLKKICEAQIAFFEPRSKRAPMDRYVFMTLA 240

Query: 241 VGDGYGGLEHRASTALICSRADLPVKGKPEQTDGYRTYLGLCSHEYFHTWNVKRIKPAVF 300
           VGDGYGGLEHRASTALIC+RADL VKGKPEQTDGYRTYLGLCSHEYFHTWNVKRIKPAVF
Sbjct: 241 VGDGYGGLEHRASTALICARADLSVKGKPEQTDGYRTYLGLCSHEYFHTWNVKRIKPAVF 300

Query: 301 APYDLRQENYTSLLWLFEGFTSYYDDLFLVRTGVIDLDNYLKLVGKTVTGVLRGTGRKKQ 360
           APYDLRQENYTSLLWLFEGFTSYYDDLFLVRTGVID DNYLKLVGKTVTGVLRGTGRKKQ
Sbjct: 301 APYDLRQENYTSLLWLFEGFTSYYDDLFLVRTGVIDTDNYLKLVGKTVTGVLRGTGRKKQ 360

Query: 361 SVAESSFDAWVKYYRQDENASNAIVSYYTKGSLVALGLDLTIRSQTRGRRSLDDVMRGLW 420
           SVAESSFDAWVKYYRQDENASNAIVSYYTKGSLVALGLDLTIR+QTRGRRSLDDVMRGLW
Sbjct: 361 SVAESSFDAWVKYYRQDENASNAIVSYYTKGSLVALGLDLTIRTQTRGRRSLDDVMRGLW 420

Query: 421 TRYGRDFYDGKQQGVPEDEILSIMEALSGADLKRFHDRHIRGTEDVPLVDLLPAFGVAYE 480
            RYGRDFY+GKQQGVPEDEIL+IME LSGADLKRFHDRHIRGTEDVP  DLLPAFGVAYE
Sbjct: 421 VRYGRDFYEGKQQGVPEDEILAIMEELSGADLKRFHDRHIRGTEDVPFEDLLPAFGVAYE 480

Query: 481 ASVPVDAKPWLGARIGKEGGDAKLAAVYEGGPAMQAGLSAGDKLVAIDGLRVPASGPDGL 540
           A+VP DAKPWLGARIGKEGGDAKLAAVYEGGPAM AGLSAGDKLVAIDGLRVPASGPDGL
Sbjct: 481 ANVPADAKPWLGARIGKEGGDAKLAAVYEGGPAMLAGLSAGDKLVAIDGLRVPASGPDGL 540

Query: 541 LARYRFNDTVRIHAFRRDELMEFSLRLKSDTAPQVTLKPLAKPVAVLRQRQAWLNSGK 598
           LARYR NDTVRIHAFRRDELMEFS+RLK+DTAPQV+L+ LAKPVA  RQR AWL+ GK
Sbjct: 541 LARYRLNDTVRIHAFRRDELMEFSVRLKADTAPQVSLQALAKPVAAARQRAAWLHEGK 598


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,110,383
Number of extensions: 98401
Number of successful extensions: 219
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 507
Effective length of database: 1,188,985
Effective search space: 602815395
Effective search space used: 602815395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)