BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0188.p
         (255 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313213|ref|YP_003777305.1| transposase IS200-like protein ...   446   e-126

>gi|300313213|ref|YP_003777305.1| transposase IS200-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  446 bits (1146), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/242 (87%), Positives = 228/242 (94%)

Query: 13  MARLPRLVVPHQPHHIIQRGHDGLVIFRDADDHLAFLGWLKEAARQFKVAVHAYVLMPDH 72
           MARLPRLVVPHQPHHIIQRGHDGL++FRDADDHLAFLGWLK+AARQFKVAVHAYVLMPDH
Sbjct: 1   MARLPRLVVPHQPHHIIQRGHDGLIVFRDADDHLAFLGWLKDAARQFKVAVHAYVLMPDH 60

Query: 73  LHLLATPADDQGLARMMQWIGRHYVPYFNQKHGRSGTLWQGRYRATVIDPELYLLAICRY 132
           LHLLATP+DDQGLARMMQW+GRHYVPYFNQKHGRSGTLWQGRYRATVIDP+LYLL +CRY
Sbjct: 61  LHLLATPSDDQGLARMMQWVGRHYVPYFNQKHGRSGTLWQGRYRATVIDPDLYLLPVCRY 120

Query: 133 IELNPVRNGLAASPGDYPWSSYMHHIGAKQDGLITDHPQYWSIGNTPFDREIAYRQLTEE 192
           IELNPVR+GL  SPGDYPWSSYMHHIGAKQDGLITDHPQYWSIGNTPFDREIAYRQLTEE
Sbjct: 121 IELNPVRSGLTVSPGDYPWSSYMHHIGAKQDGLITDHPQYWSIGNTPFDREIAYRQLTEE 180

Query: 193 GLARAEVERITDATLKGWALGSEDFKQGLERQTHRRVSPAKRGRPAIVRTAGEADEVSVR 252
           GL  AEV+RITDATLKGWALGS++FK GLER T RRVSPAKRGRPA+  T  +A++ + +
Sbjct: 181 GLPAAEVQRITDATLKGWALGSDEFKHGLERVTRRRVSPAKRGRPALGVTDIDAEDDAEQ 240

Query: 253 QE 254
           QE
Sbjct: 241 QE 242


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 924,050
Number of extensions: 42175
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,226,865
Effective search space: 211020780
Effective search space used: 211020780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)