BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0187.p
         (325 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313214|ref|YP_003777306.1| transport protein [Herbaspirill...   574   e-165

>gi|300313214|ref|YP_003777306.1| transport protein [Herbaspirillum
           seropedicae SmR1]
          Length = 314

 Score =  574 bits (1480), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 286/313 (91%), Positives = 302/313 (96%)

Query: 12  MWIGFIVFVLGMLAVDMFALGGRNAHRVSPKEALSWSVVWVSLAFLFAGLMWWYLDANVG 71
           MW GFI+FVLGMLAVDMFALGGRNAHRVSP+EAL WS VWVSLAF+FAGLMWWYLDA+VG
Sbjct: 1   MWAGFILFVLGMLAVDMFALGGRNAHRVSPREALGWSAVWVSLAFVFAGLMWWYLDAHVG 60

Query: 72  REFANQKGAEFLSGYLIEKALSVDNIFVFLMIFSYFSVPAEMQRRVLLYGVIGAIVMRAV 131
           REFANQKGAEFLSGYLIEKALSVDNIFVFLMIFSYF+VP EMQRRVLLYGV+GAIVMRAV
Sbjct: 61  REFANQKGAEFLSGYLIEKALSVDNIFVFLMIFSYFAVPPEMQRRVLLYGVVGAIVMRAV 120

Query: 132 MILLGAWMIAQFSWILYVFGAFLVFTGIKMLIFADKESDLGDNPLLRWLRGHMKISDNYD 191
           MILLGAWMIAQFSWILYVFGAFLVFTG+KMLIFADKE+DLGDNPLLRWLRGH+KIS++YD
Sbjct: 121 MILLGAWMIAQFSWILYVFGAFLVFTGVKMLIFADKEADLGDNPLLRWLRGHLKISNDYD 180

Query: 192 GENFTTRINGVRYFTPLMLVLLLIEISDVIFAVDSIPAIFAITKDPFIVFTSNMFAIMGL 251
           GE FTTR+NGVRYFTPLMLVLLLIEISDVIFAVDSIPAIFAITKDPFIVFTSNMFAIMGL
Sbjct: 181 GEKFTTRVNGVRYFTPLMLVLLLIEISDVIFAVDSIPAIFAITKDPFIVFTSNMFAIMGL 240

Query: 252 RALYFLLADSAERFHLLKYGLALVLLFVGGKMLASYWFHVPVLVSLSIVGAILVISIIAS 311
           RALYFLLADSAERFHLLKYGLALVLLFVG KMLASYWFHVPV+ SLSIVGAILV+SIIAS
Sbjct: 241 RALYFLLADSAERFHLLKYGLALVLLFVGFKMLASYWFHVPVVWSLSIVGAILVVSIIAS 300

Query: 312 LVLTKGKDKETTA 324
           L L+K K KE +A
Sbjct: 301 LALSKDKKKENSA 313


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.144    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 930,937
Number of extensions: 37909
Number of successful extensions: 178
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 240
Effective length of database: 1,217,395
Effective search space: 292174800
Effective search space used: 292174800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 131 (55.1 bits)