BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0184.p
         (407 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313218|ref|YP_003777310.1| transport protein [Herbaspirill...   629   0.0  

>gi|300313218|ref|YP_003777310.1| transport protein [Herbaspirillum
           seropedicae SmR1]
          Length = 412

 Score =  629 bits (1623), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/407 (82%), Positives = 359/407 (88%), Gaps = 4/407 (0%)

Query: 2   TQPAASHPS--ASLHALAWKVCLSGMVALSVAMGIGRFAFTPLLPMMLHEGSLSLQMGGW 59
           T PA+S P   A  + L+WKVCL+GMVALSVAMGIGRFAFTPLLP+MLHEGSL+LQMGGW
Sbjct: 6   TAPASSLPRSPAQRNRLSWKVCLAGMVALSVAMGIGRFAFTPLLPLMLHEGSLNLQMGGW 65

Query: 60  LATANYLGYFAGAMLCAFHRSKRGVAMLRAGLVVTILLTLGMGVLHQDWIWLWMRFLSGV 119
           LATANYLGYF GAM CA HRSKRGV MLR GLV TILLTLGMG+L  +W+WL MRFLSGV
Sbjct: 66  LATANYLGYFVGAMACAVHRSKRGVRMLRIGLVATILLTLGMGLLQWNWLWLLMRFLSGV 125

Query: 120 ASAYVFVYTAGWCLQQLTQLGRPELGGVIFCGPGLGIALTGLLSGPMIAAGWLAAGGWIL 179
           ASAYVFVYTAGWCL QLTQL RPELGGVIFCGPGLGIALTGLL+GPMI+AGW+AAGGWI 
Sbjct: 126 ASAYVFVYTAGWCLHQLTQLQRPELGGVIFCGPGLGIALTGLLTGPMISAGWVAAGGWIA 185

Query: 180 FGVIALGLTALVWKSFSFDAGRGLNVHPHDSNAAQAPVPESASRKREVMIQVIAYGIAGF 239
           +G+IALGLTALVW++F FDAG+G       +    A   ES  +KREV +QVIAYGIAGF
Sbjct: 186 YGIIALGLTALVWQTFRFDAGQGQAS--AATTTTDASAQESPRQKREVTVQVIAYGIAGF 243

Query: 240 GYIITATFLPVIARQALPGSVWPDYFWPIFGLSVAAGAFSATRLSVQGDQRLLLTGAYLM 299
           GYIITATFLPVIARQALPGS WPDYFWPIFGLSVAAGAFSATR SV  DQRLLLT AYLM
Sbjct: 244 GYIITATFLPVIARQALPGSAWPDYFWPIFGLSVAAGAFSATRFSVHTDQRLLLTAAYLM 303

Query: 300 QAAGVLVSILFPTAPGFALSCLLLGLPFTAITLFGMREARRLRREQASSLMALMTAAYGI 359
           QAAGVL+SILFP A GFALSCLLLGLPFTAITLFGMREARRLRREQASSLMALMTAAYGI
Sbjct: 304 QAAGVLLSILFPNAWGFALSCLLLGLPFTAITLFGMREARRLRREQASSLMALMTAAYGI 363

Query: 360 GQIAGPPLATALVHGSGSFTPSLCVAAVTLLIGAGLYYRLTITHRLP 406
           GQIAGPPLAT+LVH SGSFTPSLCVAA+TL+IGA LYYRLT THRLP
Sbjct: 364 GQIAGPPLATSLVHASGSFTPSLCVAAITLIIGAALYYRLTRTHRLP 410


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,243,231
Number of extensions: 52341
Number of successful extensions: 304
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 2
Length of query: 407
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 320
Effective length of database: 1,207,925
Effective search space: 386536000
Effective search space used: 386536000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)