BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0183.p
         (499 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313219|ref|YP_003777311.1| AMP nucleosidase [Herbaspirillu...   939   0.0  

>gi|300313219|ref|YP_003777311.1| AMP nucleosidase [Herbaspirillum
           seropedicae SmR1]
          Length = 502

 Score =  939 bits (2426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/470 (96%), Positives = 462/470 (98%), Gaps = 1/470 (0%)

Query: 1   MFATEKFTNPEAAYARVLEIYEHNTAILRDAFRQFSSGEGM-PQRVRACYPFVRITTEKS 59
           MFATEKFT+P+AAYARVLEIYEHNTAILRDAFRQFSSG+ M  QRVRACYPFVRITTEKS
Sbjct: 2   MFATEKFTDPDAAYARVLEIYEHNTAILRDAFRQFSSGQPMDQQRVRACYPFVRITTEKS 61

Query: 60  THTDTRQSFGFVAGPGCYETTLTRPKLFHQYLLAQFKLVLQNHEVPLEVGVSELPIPVHF 119
           THTDTRQSFGFVAGPGCY+TTLTRPKLFHQYLLAQF+L+LQNHEVPLEVGVS++PIPVHF
Sbjct: 62  THTDTRQSFGFVAGPGCYQTTLTRPKLFHQYLLAQFRLILQNHEVPLEVGVSDMPIPVHF 121

Query: 120 AFPEGIHVEGSLDPEHLRTLPDYFDLPDLATMDDRIANGTYEVDNGAWREGPHPLALFTG 179
           AFPEGIHVEGSLDPEHLRTLPD+FDLPDLATMDDRIANGTYEVDNGAWREGPHPLALFTG
Sbjct: 122 AFPEGIHVEGSLDPEHLRTLPDHFDLPDLATMDDRIANGTYEVDNGAWREGPHPLALFTG 181

Query: 180 PRIDYSLHRLRHYTATSPDQFQRYVLFTNYAFYVDEFVRLGRRLMEPTDDPDELAYRRQY 239
           PRIDYSLHRLRHYTATSPDQFQRYVLFTNYAFYVDEFVRLGRRLMEPTDDPDELAYRRQY
Sbjct: 182 PRIDYSLHRLRHYTATSPDQFQRYVLFTNYAFYVDEFVRLGRRLMEPTDDPDELAYRRQY 241

Query: 240 TAFVEPGNVTTWSANQTGTETRPVSGVAPARQPQMPAYHLQRADGSGITLVNIGVGPSNA 299
           TAFVEPGNVTTWSANQ G ETR  SGVAPARQPQMPAYHLQRADGSGITLVNIGVGPSNA
Sbjct: 242 TAFVEPGNVTTWSANQEGAETRAASGVAPARQPQMPAYHLQRADGSGITLVNIGVGPSNA 301

Query: 300 KTVTDHVAVLRPHGWLMLGHCAGLSASQRMGDYVLAHAYVRDDHVLDDDLPLWVPIPALA 359
           KTVTDHVAVLRPHGWLMLGHCAGLSASQRMGDYVLAHAYVRDDHVLDDDLPLWVPIPALA
Sbjct: 302 KTVTDHVAVLRPHGWLMLGHCAGLSASQRMGDYVLAHAYVRDDHVLDDDLPLWVPIPALA 361

Query: 360 EVQLALQDAVASITQLDGYELKRIMRTGTVASVDDRNWELRDHRMPLLRFSQSRAIALDM 419
           EVQLALQDAVASIT+LDGYELKRIMRTGTVASVDDRNWELRDHR PLLRFSQSRAIALDM
Sbjct: 362 EVQLALQDAVASITRLDGYELKRIMRTGTVASVDDRNWELRDHRTPLLRFSQSRAIALDM 421

Query: 420 ESATVAANGFRFRVPYGTLLCVSDKPLHGEIKLPGMANTFYEQRVAQHLQ 469
           ESATVAANGFRFRVPYGTLLCVSDKPLHGEIKLPGMANTFYEQRVAQHLQ
Sbjct: 422 ESATVAANGFRFRVPYGTLLCVSDKPLHGEIKLPGMANTFYEQRVAQHLQ 471


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,695,170
Number of extensions: 76201
Number of successful extensions: 181
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 410
Effective length of database: 1,198,455
Effective search space: 491366550
Effective search space used: 491366550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)