BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0182.p
         (364 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal Glu-tRN...   545   e-156
gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal Glu-tRN...   389   e-109

>gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  545 bits (1405), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 269/284 (94%), Positives = 272/284 (95%), Gaps = 9/284 (3%)

Query: 81  MQIASENMNNDAWLKLAKRVNTLLAQSDVDGIVITHGTDTIEETAYFLDLVVKSKKPVVI 140
           MQIASENMNNDAWLKL KRVNTLLAQSDVDGIVITHGTDTIEETAYFLDLVVKSKKPVVI
Sbjct: 1   MQIASENMNNDAWLKLGKRVNTLLAQSDVDGIVITHGTDTIEETAYFLDLVVKSKKPVVI 60

Query: 141 VGAMRPSTAISADGPINLYNAVLLAGSKEAVGKGVLVTLNDQINAGREVTKTNTSTMDTF 200
           VGAMRPSTAISADGPINLYNAVLLAGSKEA+GKGVLVTLNDQINAGREVTKTNTST+DTF
Sbjct: 61  VGAMRPSTAISADGPINLYNAVLLAGSKEAIGKGVLVTLNDQINAGREVTKTNTSTLDTF 120

Query: 201 KTPELGFLGYIQGSKPYFYRQSTRKNTADTPFDIMNLDKLPQVDIVYGYANMNPIALNAF 260
           KTPELGFLGYIQGSKPYFYRQSTRKNT DTPFDIMNLDKLPQVDIVYGYANMNPIALNAF
Sbjct: 121 KTPELGFLGYIQGSKPYFYRQSTRKNTVDTPFDIMNLDKLPQVDIVYGYANMNPIALNAF 180

Query: 261 VAAGAQGIIHAGGGEXKYVTGVGDGSLNNTVVPSLTEARKKGVVIVRSSRVGQGIVARNG 320
           VAAGAQGIIHA         GVGDGSLNNTVVPSLTEARKKGVVIVRSSRVGQGIVARNG
Sbjct: 181 VAAGAQGIIHA---------GVGDGSLNNTVVPSLTEARKKGVVIVRSSRVGQGIVARNG 231

Query: 321 EADDDKLDFVVSDTLNPQKARILLMLALTKTTDSKEIQKMFWEY 364
           EADDDKLDFVVSDTLN QKARILLMLALTKTTD+KEIQKMFWEY
Sbjct: 232 EADDDKLDFVVSDTLNAQKARILLMLALTKTTDTKEIQKMFWEY 275


>gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  389 bits (999), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/355 (58%), Positives = 265/355 (74%), Gaps = 11/355 (3%)

Query: 11  LVLLCLAAAAAAQAQNL-PNVVILATGGTIAGTGATSTTTVGYTAAKVGVDALIAAVPEL 69
           +++L LA A +AQAQ+  PNVV++ TGGTIAG GA+S  T  Y +A V VD +IAAVPE+
Sbjct: 12  VMILSLACAFSAQAQDKKPNVVVIGTGGTIAGAGASSVNTAAYQSAVVPVDKIIAAVPEI 71

Query: 70  KKVANVRGEQVMQIASENMNNDAWLKLAKRVNTLLAQSDVDGIVITHGTDTIEETAYFLD 129
            K+ANVRGEQ+ QI SE+ N++  +KL KRV+ LL Q+DVDGIVITHGTDTIEETAYFL+
Sbjct: 72  SKIANVRGEQIFQIGSESFNDERLIKLGKRVSELLKQNDVDGIVITHGTDTIEETAYFLN 131

Query: 130 LVVKSKKPVVIVGAMRPSTAISADGPINLYNAVLLAGSKEAVGKGVLVTLNDQINAGREV 189
           LV+KS KPVV+VG+MRP TA+ ADG +NLY+AVL+AGSKEA GKG LV +ND+I++GR+V
Sbjct: 132 LVLKSDKPVVVVGSMRPGTALGADGALNLYDAVLVAGSKEAAGKGTLVVMNDEIHSGRDV 191

Query: 190 TKTNTSTMDTFKTPELGFLGYIQGSKPYFYRQSTRKNTADTPFDIMNLDKLPQVDIVYGY 249
           TK+NT  ++TF++P  G LGY+  +K  FYR   R +T  T FDI  +  LP+VDIVY Y
Sbjct: 192 TKSNTFKVETFRSP-YGPLGYVVENKLSFYRLPARPHTTQTEFDIDKISSLPRVDIVYNY 250

Query: 250 ANMNPIALNAFVAAGAQGIIHAGGGEXKYVTGVGDGSLNNTVVPSLTEARKKGVVIVRSS 309
            N++  A +AFVAAGA+ IIH          G G+GS+   +VP L E R KGV ++R+S
Sbjct: 251 GNVSRTAYDAFVAAGAKAIIH---------DGTGNGSVAEQIVPVLQEVRSKGVQVIRAS 301

Query: 310 RVGQGIVARNGEADDDKLDFVVSDTLNPQKARILLMLALTKTTDSKEIQKMFWEY 364
           R G G+V RNGE  DDK D+VV+D  N QKARIL  LALTKT D KE+QK+ W+Y
Sbjct: 302 RTGSGVVIRNGEQPDDKFDWVVTDDQNAQKARILAELALTKTNDPKELQKIMWKY 356


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 890,898
Number of extensions: 33874
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 2
Length of query: 364
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,212,660
Effective search space: 337119480
Effective search space used: 337119480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)