BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0181.p (535 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313221|ref|YP_003777313.1| periplasmic glucans biosynthesi... 637 0.0 gi|300312745|ref|YP_003776837.1| periplasmic glucans biosynthesi... 268 1e-72 gi|300314061|ref|YP_003778153.1| periplasmic glucan biosynthesis... 259 3e-70 >gi|300313221|ref|YP_003777313.1| periplasmic glucans biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 637 bits (1642), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/410 (78%), Positives = 345/410 (84%), Gaps = 5/410 (1%) Query: 1 MPSRRQFLAAASTASALAALGLSPR---ALAAQGLRLGRAQPFSFDSLIARARDMARTPY 57 M SRR+FL A + AAL ALAAQG+ QPFSF LI RAR MA TPY Sbjct: 2 MTSRRRFLCATGATATAAALSALGLPSGALAAQGIETSAPQPFSFAQLIERARQMASTPY 61 Query: 58 QAPPAVPADVLDKIDYEAHGKIRFKTADALFAQGPGAFPVTFFHLGKFFRVPVRMFILAG 117 Q A PA +LD+IDY+AHGKIRFK A FA GPG FP+TFFHLGKFFRVPVRMF+L G Sbjct: 62 QPAAAAPAAILDRIDYDAHGKIRFKPDRAAFATGPGPFPLTFFHLGKFFRVPVRMFLLEG 121 Query: 118 QGDGTVPAQSREVSYRDDYFDMPADSPAHQLPAGSGFAGFRFQESRLADQKEKDWHTNDW 177 GD T P Q+RE+ YRDDYFDMPADSPAH LP GSGFAGFRFQESRL DQ+ KDW NDW Sbjct: 122 AGDATAPTQARELRYRDDYFDMPADSPAHALPPGSGFAGFRFQESRLGDQQVKDWRKNDW 181 Query: 178 VAFLGASYFRAIGDLYQYGLSARGIAIDVAQADRPEEFPDFTQFFFEPSAPGSDTVVVYA 237 VAFLGASYFRAIGDLYQYGLSARG+AIDVA A + EEFPDFTQFFFEP APGSDTVVVYA Sbjct: 182 VAFLGASYFRAIGDLYQYGLSARGVAIDVAVAGKSEEFPDFTQFFFEPGAPGSDTVVVYA 241 Query: 238 LLDGPSITGAYRFAMQRKQGGGVHMEIDKSLFLRRDVARLGLAPATSMYWFSETVKGTGA 297 LLDGPSITGAYRFAMQR G GV MEIDK LFLRRDV RLGLAPATSMYW+SETVKGTG Sbjct: 242 LLDGPSITGAYRFAMQR--GQGVTMEIDKQLFLRRDVERLGLAPATSMYWYSETVKGTGV 299 Query: 298 DWRPEVHDSDGLAIWNGAGEHLWRPLNNPPRTMSSAFSDQHLRGFGLLQRDRDFDHYLDG 357 DWRPEVHDSDGLAIWNGAGEHLWRPLNNPPRT++S+F+D+ RGFGL+QRDRDFDHYLDG Sbjct: 300 DWRPEVHDSDGLAIWNGAGEHLWRPLNNPPRTIASSFADRQPRGFGLMQRDRDFDHYLDG 359 Query: 358 VHYERRPSLWVEPVGDWGEGEVQLIELRTDDEIHDNIVAMWVPKAPAXLG 407 VHYERRPSLWVEP+GDWGEG+VQLIELRTDDEIHDNIVAMWVPKA A G Sbjct: 360 VHYERRPSLWVEPLGDWGEGQVQLIELRTDDEIHDNIVAMWVPKAAARAG 409 >gi|300312745|ref|YP_003776837.1| periplasmic glucans biosynthesis G protein [Herbaspirillum seropedicae SmR1] Length = 541 Score = 268 bits (684), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 158/374 (42%), Positives = 213/374 (56%), Gaps = 21/374 (5%) Query: 40 FSFDSLIARARDMARTPYQAPPAVPADVLDKIDYEAHGKIRFKTADALFAQGPGAFPVTF 99 F F+++ ARA+ +A Y+ P L + YE +I F+ + + F ++F Sbjct: 55 FDFNTVAARAKALAGKSYKKPADELPKSLKDLSYEQASQIYFRDDKSYWRAQKLPFELSF 114 Query: 100 FHLGKFFRVPVRMFILAGQGDGTVPAQSREVSYRDDYFDMPADSPAHQLPAGS-GFAGFR 158 HLG + P+++ + G RE+ + FD A + GFAGFR Sbjct: 115 IHLGASYTEPIKVNEVVGDA-------VREIHFNPALFDYSATRSVDPRSLRNLGFAGFR 167 Query: 159 FQESRLADQKEKDWHTNDWVAFLGASYFRAIGDLYQYGLSARGIAIDVAQADRPEEFPDF 218 + + K KD D + F GASYFRA+G YGLSARG+AID A EEFP F Sbjct: 168 VRFP-VNSAKVKD----DVLTFHGASYFRALGKGQSYGLSARGLAIDTALYSG-EEFPRF 221 Query: 219 TQFFFEPSAPGSDTVVVYALLDGPSITGAYRFAMQRKQGGGVHMEIDKSLFLRRDVARLG 278 T+F+ E + S +V+YALLD P TGAYRF + K G M++ L+LR +V +LG Sbjct: 222 TEFWLERPSAESKELVIYALLDSPRATGAYRFVL--KPGADTVMDVKAQLYLRSNVTKLG 279 Query: 279 LAPATSMYWFSETVKGTGADWRPEVHDSDGLAIWNGAGEHLWRPLNNPPRTMSSAFSDQH 338 +AP TSM+ F E G D+RPEVHDSDGLA+ +G GE LWRPL NP R + ++FS + Sbjct: 280 IAPLTSMFLFGENQPGPADDFRPEVHDSDGLAMQSGTGEWLWRPLVNPKRLLVTSFSFDN 339 Query: 339 LRGFGLLQRDRDFDHYLD-GVHYERRPSLWVEPVGDWGEGEVQLIELRTDDEIHDNIVAM 397 GFGL+QRDR F HY D +Y+ RPS WVEP G WG G V+L+++ T DE +DNIVA Sbjct: 340 PLGFGLMQRDRSFSHYEDLDYNYQARPSAWVEPKGKWGSGRVELVQIPTPDETNDNIVAY 399 Query: 398 WVPKAPAXLGPAPG 411 W+P P PG Sbjct: 400 WIPNTL----PKPG 409 >gi|300314061|ref|YP_003778153.1| periplasmic glucan biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 259 bits (663), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 161/395 (40%), Positives = 222/395 (56%), Gaps = 27/395 (6%) Query: 7 FLAAASTASALAALGLSPRALAAQGLRLGRAQPFSFDSLIARARDMARTPYQAPPAVPAD 66 ++A +A LAA S +A +QG L +A +ARA+D+A PYQ P + + Sbjct: 1 MVSATLSACLLAA---SAQAQTSQGFDLNQA--------VARAKDLAAKPYQKPVSNLSP 49 Query: 67 VLDKIDYEAHGKIRFKTADALFAQGPGAFPVTFFHLGKFFRVPVRMFILAGQGDGTVPAQ 126 + + + KI+ K+ + F + F+H G F PV + + DG V Sbjct: 50 TFAAMQFADYMKIQPKSEKFEWRDQKTPFKLAFYHQGMQFNAPVAIHEII---DGRV--- 103 Query: 127 SREVSYRDDYFDMPADSPAHQLPAGSGFAGFRFQESRLADQKEKDWHTNDWVAFLGASYF 186 ++V Y D F+ + A A G+AGFR D KE ++ ++ LGASYF Sbjct: 104 -QDVGYSTDRFNFGDLNLAKDSTAHLGYAGFRVVYPINRDDKE-----DEVMSVLGASYF 157 Query: 187 RAIGDLYQYGLSARGIAIDVAQADRPEEFPDFTQFFFEPSAPGSDTVVVYALLDGPSITG 246 R IG YGLSARG+AID A EEFP FT+F+ + APG + YALLD P TG Sbjct: 158 RVIGKGQVYGLSARGLAIDTAMMSG-EEFPHFTEFWIQRPAPGEKQLTFYALLDSPRATG 216 Query: 247 AYRFAMQRKQGGGVHMEIDKSLFLRRDVARLGLAPATSMYWFSETVKGTGADWRPEVHDS 306 AY+F + G +++ +FLR +V RLG+AP TSM+ F + + ++RP +HDS Sbjct: 217 AYKFTL--TPGKDALLDVQARVFLRGEVGRLGIAPLTSMFLFGPNQQSSRRNFRPAIHDS 274 Query: 307 DGLAIWNGAGEHLWRPLNNPPRTMSSAFSDQHLRGFGLLQRDRDFDHYLD-GVHYERRPS 365 +GLAI G GE LWRPLN+P S+F + RGFGLLQR R+F Y D Y+ RPS Sbjct: 275 NGLAIHTGNGEWLWRPLNDPQNVEVSSFEVSNPRGFGLLQRGREFSAYEDLKDRYDLRPS 334 Query: 366 LWVEPVGDWGEGEVQLIELRTDDEIHDNIVAMWVP 400 W+EP GDWG+G VQL+E+ T DE +DNIVA W+P Sbjct: 335 AWIEPKGDWGKGAVQLVEIPTADETNDNIVAYWLP 369 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,720,668 Number of extensions: 79102 Number of successful extensions: 227 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 217 Number of HSP's successfully gapped: 3 Length of query: 535 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 445 Effective length of database: 1,193,720 Effective search space: 531205400 Effective search space used: 531205400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)