BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0180.p
         (101 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313222|ref|YP_003777314.1| hypothetical protein Hsero_3935...   118   1e-28

>gi|300313222|ref|YP_003777314.1| hypothetical protein Hsero_3935
           [Herbaspirillum seropedicae SmR1]
          Length = 97

 Score =  118 bits (295), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 72/101 (71%), Gaps = 4/101 (3%)

Query: 1   MKKMSFLMLAAGSLAMLAAAKPVLRRYDDLNRRRAGTAPADTASGQPAIIGEEDMQPVAQ 60
           MKK+S  MLAAGSLAMLA A+PV R+YDD+NRRR      +T +G P  +GE+DMQ VAQ
Sbjct: 1   MKKLSLFMLAAGSLAMLACARPVKRQYDDINRRRR----TETDAGMPRTLGEQDMQAVAQ 56

Query: 61  ESSIVADGTQHHDPAGAPPVQAAAVDAPPRKDGDFAPPVGA 101
           ESS+VA   Q H P  A P Q A  DA  RKDGDFAPPVGA
Sbjct: 57  ESSMVAPPAQQHTPNSAAPSQPATADAAARKDGDFAPPVGA 97


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 233,104
Number of extensions: 6718
Number of successful extensions: 20
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 1,619,870
Length adjustment: 70
Effective length of query: 31
Effective length of database: 1,288,420
Effective search space: 39941020
Effective search space used: 39941020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 123 (52.0 bits)