BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0177.p
         (210 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313225|ref|YP_003777317.1| oxidoreductase [Herbaspirillum ...   336   7e-94
gi|300312824|ref|YP_003776916.1| plant photosystem II stability/...   217   6e-58

>gi|300313225|ref|YP_003777317.1| oxidoreductase [Herbaspirillum
           seropedicae SmR1]
          Length = 327

 Score =  336 bits (862), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 169/206 (82%), Positives = 185/206 (89%)

Query: 5   EVDQPLFTVYFRDRLHGWAAGLWSLLLQTEDGGKTWTPLHLPVAAGSKRSDLNLLHLFAG 64
           +VDQPLFTVYFRDR HGWAAGLWSLLLQTEDGGKTWT LHLPVAAGSKRSDLNLL  F G
Sbjct: 122 DVDQPLFTVYFRDREHGWAAGLWSLLLQTEDGGKTWTTLHLPVAAGSKRSDLNLLRFFPG 181

Query: 65  QGDALYLAAEQGTLFRSRDGGQHWELQSTGSKASLWSGAVALPSGTLIVAGLGGKLLRSM 124
            GD LYLAAEQGTLFRS D GQHW++ +TGSKASLWSGAVA P+G LIVAGLGGKLLRS 
Sbjct: 182 SGDTLYLAAEQGTLFRSTDAGQHWDILATGSKASLWSGAVAQPAGALIVAGLGGKLLRST 241

Query: 125 DEGATWQAVALPTSGSITALQATPGVLTASSLEGKLLQSRDDGLSWQVVATAPQAITTLL 184
           D G+ WQ VALPTSGSIT +QATPG+LTA+SLEGK+LQSRD+G+SWQV+ +APQ +TT+L
Sbjct: 242 DGGSQWQTVALPTSGSITRVQATPGLLTAASLEGKILQSRDEGVSWQVLWSAPQGLTTIL 301

Query: 185 VNRLGQVLPFSKEGVLKPVEPGAAKP 210
           VNRLGQVLPFSKEGVLKPVE  AAKP
Sbjct: 302 VNRLGQVLPFSKEGVLKPVEGVAAKP 327


>gi|300312824|ref|YP_003776916.1| plant photosystem II
           stability/assembly factor protein [Herbaspirillum
           seropedicae SmR1]
          Length = 331

 Score =  217 bits (552), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 115/198 (58%), Positives = 144/198 (72%), Gaps = 3/198 (1%)

Query: 6   VDQPLFTVYFRDRLHGWAAGLWSLLLQTEDGGKTWTPLHLPVAAGSKRSDLNLLHLFAGQ 65
           VDQPLF+++F +   GWAAGLWSLLL T+DGGK+W  + LP A G +R+DLNLLH+F G+
Sbjct: 128 VDQPLFSIWFANANEGWAAGLWSLLLHTQDGGKSWQQVKLPAAPGQQRADLNLLHIFPGR 187

Query: 66  GDALYLAAEQGTLFRSRDGGQHWELQSTGSKASLWSGAVALPSGTLIVAGLGGKLLRSMD 125
             AL++AAEQG L+RSRDGGQHWE  +TG+KASLWSG V+  SG ++V GLGGKLLRS D
Sbjct: 188 DGALFVAAEQGVLYRSRDGGQHWEALATGTKASLWSG-VSTASGAIVVGGLGGKLLRSDD 246

Query: 126 EGATWQAVALPTSGSITALQATPGVLTASSLEGKLLQSRDDGLSWQVVATAPQAITTLLV 185
            G  WQ +A PTSGSITAL++    + ASSL G LL S DDG  W++ ATA  A+TTL +
Sbjct: 247 GGQHWQVIASPTSGSITALRSEGNQVMASSLSGALLASDDDGRQWRIKATARDALTTLEL 306

Query: 186 N--RLGQVLPFSKEGVLK 201
              R  + L + K G  K
Sbjct: 307 QEGRAERPLAYGKGGQAK 324


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 774,782
Number of extensions: 35221
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 4
Length of query: 210
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,236,335
Effective search space: 159487215
Effective search space used: 159487215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)