BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0175.p (579 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313227|ref|YP_003777319.1| hypothetical protein Hsero_3940... 1103 0.0 gi|300312822|ref|YP_003776914.1| hypothetical protein Hsero_3527... 784 0.0 >gi|300313227|ref|YP_003777319.1| hypothetical protein Hsero_3940 [Herbaspirillum seropedicae SmR1] Length = 581 Score = 1103 bits (2854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 537/581 (92%), Positives = 558/581 (96%), Gaps = 2/581 (0%) Query: 1 MKKPMRKT-RRAGSALPRMLPIVVPLMGACLYTGNAQAFTFEGESVSGNFDSTVTVGVGI 59 MK +RK RR GSALPRMLP+V+PLMGACLY+GNAQAFTFE ESVSGNFDSTVT+GVGI Sbjct: 1 MKMQLRKKLRRTGSALPRMLPVVLPLMGACLYSGNAQAFTFETESVSGNFDSTVTLGVGI 60 Query: 60 RASKPVCAGIIGSVNGGQPSGPTGAGAPDGCADSLSQYNDQGNLNYDRGSAFTTYIKGTH 119 RA+KP C+ IIG+VNGGQPSGPTGAGAP GCADSLSQYNDQGNLNYDRGSAFTTY+KGTH Sbjct: 61 RAAKPGCSSIIGTVNGGQPSGPTGAGAPAGCADSLSQYNDQGNLNYDRGSAFTTYLKGTH 120 Query: 120 ELMLKLPSDVKFLGRVSWLRDFAA-DSATGYVSGGGGSSFPGNAASQVRNKTRLLDLWVS 178 ELMLKLP D KFLGRVSW+RDFAA S TGYVSGGGGS+FPGNA+ QV NKTRLLDLWVS Sbjct: 121 ELMLKLPDDFKFLGRVSWMRDFAAATSTTGYVSGGGGSTFPGNASGQVSNKTRLLDLWVS 180 Query: 179 KEFSIGEQRARLRVGNQVVNWGESLFIPGGINQTNALDLMRLSQPGTQMKEAVLPAPMVN 238 KEFSIG+QRARLRVGNQVVNWGESLFIPGGINQTNALDLMRLSQPGTQMKEAVLPAPMVN Sbjct: 181 KEFSIGDQRARLRVGNQVVNWGESLFIPGGINQTNALDLMRLSQPGTQMKEAVLPAPMVN 240 Query: 239 FATGLGHGLSVETYVQQGWQRNYFPPVGSYWSIGTIGNGASELGVPTTSTPRSSGQYGVA 298 FATGLG G S+ETY+QQGWQRNYFPPVGSYWSIGTIGNGA ELGVPTTSTPRSSGQYGVA Sbjct: 241 FATGLGKGFSIETYLQQGWQRNYFPPVGSYWSIGTIGNGAPELGVPTTSTPRSSGQYGVA 300 Query: 299 LRYSPKDTEMNFGLYLMNYHDKSPVMSTSTSSVSGFGYSYLQDRKMIGASMNFPVGNWAV 358 LRYSPKD+EMNFGLYLMNYHDKSPVMSTSTSS+SGFGYSYLQDRKMIGASMNFPVGNWAV Sbjct: 301 LRYSPKDSEMNFGLYLMNYHDKSPVMSTSTSSLSGFGYSYLQDRKMIGASMNFPVGNWAV 360 Query: 359 GTELSYRPKDPITLNTSTAGKSPTTNGSGCLANGNCYVETAKYQLAVTGLLSMTPSDNPT 418 GTELSYRPKDPITLNTSTAG SPTTNG+GCLANGNCYVETAKYQLAVTGLLSMTPSDNPT Sbjct: 361 GTELSYRPKDPITLNTSTAGNSPTTNGTGCLANGNCYVETAKYQLAVTGLLSMTPSDNPT 420 Query: 419 ILKMLGGADTATLMAEAVGIYYPNMKKSYQGIPVAAGNWGWGYDTTANAIATGAGSPPSV 478 ILK LGGADTATLMAEAVGIYYPNMK +YQGIPVAAGNWGWGYDT+ANA ATGAG+PPSV Sbjct: 421 ILKALGGADTATLMAEAVGIYYPNMKSAYQGIPVAAGNWGWGYDTSANARATGAGTPPSV 480 Query: 479 GTALSYGYNLDFSWVYDGSLIPGWQVVPEIFYFQALHGRTPNFAGTFMQGAKSANFIVSF 538 GTALSYGYNLDFSWVYDGSLIPGWQVVPEIFYFQALHGRTPNFAGTFMQGAKSANFIVSF Sbjct: 481 GTALSYGYNLDFSWVYDGSLIPGWQVVPEIFYFQALHGRTPNFAGTFMQGAKSANFIVSF 540 Query: 539 IQNPAKWQFSLNYAMFWGGDTIFDQPLRGRNFVGATATYNF 579 IQNPAKWQFSLNYAMFWGGDTIFDQPLRGRNFVGATATYNF Sbjct: 541 IQNPAKWQFSLNYAMFWGGDTIFDQPLRGRNFVGATATYNF 581 >gi|300312822|ref|YP_003776914.1| hypothetical protein Hsero_3527 [Herbaspirillum seropedicae SmR1] Length = 563 Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/562 (67%), Positives = 451/562 (80%), Gaps = 11/562 (1%) Query: 22 VVPLMGACLYTGNAQAFTFEGESVSGNFDSTVTVGVGIRASKPVCAGIIGSVNGGQPSGP 81 ++ L A L +G AQA TFEGE+VSGNFDSTV+ GVG+RASK C +IGS + G +G Sbjct: 9 IIALAAATLCSGGAQAMTFEGETVSGNFDSTVSFGVGVRASKQACGLVIGS-SAGNAAGA 67 Query: 82 TGAGAPDGCADSLSQYNDQGNLNYDRGSAFTTYIKGTHELMLKLPSDVKFLGRVSWLRDF 141 +G AP GCAD+LS NDQG+LNY+RG FTTY+KGTHEL+L +P DVKFLGRVSWLRD+ Sbjct: 68 SGPSAPGGCADALSSLNDQGDLNYNRGDRFTTYLKGTHELLLNMPEDVKFLGRVSWLRDY 127 Query: 142 AADSATGYVSGGG--GSSFPGNAASQVRNKTRLLDLWVSKEFSIGEQRARLRVGNQVVNW 199 +A TG +SGG G S +A +++ +K RLLDLWVSK F +GE+RAR+RVGNQVVNW Sbjct: 128 SATRNTGNISGGNPTGRSLSDDATNELHSKVRLLDLWVSKSFDLGEERARIRVGNQVVNW 187 Query: 200 GESLFIPGGINQTNALDLMRLSQPGTQMKEAVLPAPMVNFATGLGHGLSVETYVQQGWQR 259 GESLFI GGINQTNA+D+MRLS PGTQ+KEA+LPAPMVNFATGLG G SVETYVQQGW+ Sbjct: 188 GESLFIAGGINQTNAIDIMRLSNPGTQLKEAILPAPMVNFATGLGRGFSVETYVQQGWES 247 Query: 260 NYFPPVGSYWSIGTIGNGASELGVPTTSTPRSSGQYGVALRYSPKDTEMNFGLYLMNYHD 319 NYFPPVGSYWS T+G GA LGVP TS PRS+GQYGVALRY+P ++NFGLY+MNYHD Sbjct: 248 NYFPPVGSYWSTATVGIGAEALGVPVTSRPRSTGQYGVALRYTPPGADVNFGLYVMNYHD 307 Query: 320 KSPVMSTSTSSVSGFGYSYLQDRKMIGASMNFPVGNWAVGTELSYRPKDPITLNTSTAGK 379 KSPV+ST+ + SG GYSYL+DRKM+G S NFP+GNWA+GTELSYRPKDP++LN G Sbjct: 308 KSPVLSTANTP-SGLGYSYLEDRKMVGLSANFPLGNWAIGTELSYRPKDPVSLN----GS 362 Query: 380 SPTTNGSGCLANGNCYVETAKYQLAVTGLLSMTPSDNPTILKMLGGADTATLMAEAVGIY 439 P NG C+ NG CYVE KYQLAVTGLLS++PS++ ++LK L GADTATLM EAV I Sbjct: 363 VPNANGGFCMVNGKCYVEAEKYQLAVTGLLSLSPSEHGSVLKAL-GADTATLMVEAVAIK 421 Query: 440 YPNMKKSYQGIPVAAGNWGWGYDTTANAIATGA--GSPPSVGTALSYGYNLDFSWVYDGS 497 YPN+K SY GIPVAAG WGWGYDTTANA T A G+ VG++ SYGYN DFSWVYDGS Sbjct: 422 YPNLKSSYGGIPVAAGLWGWGYDTTANANRTLANGGNTAGVGSSTSYGYNFDFSWVYDGS 481 Query: 498 LIPGWQVVPEIFYFQALHGRTPNFAGTFMQGAKSANFIVSFIQNPAKWQFSLNYAMFWGG 557 +IPGWQV+PE+++F A+ GRTPN TFM+GAK ANF V+F+QNPAKWQ +LN+A FWGG Sbjct: 482 VIPGWQVIPEVYFFHAVKGRTPNATATFMEGAKMANFTVTFMQNPAKWQVALNFAKFWGG 541 Query: 558 DTIFDQPLRGRNFVGATATYNF 579 ++FDQPLR R+F G T + NF Sbjct: 542 ASVFDQPLRDRSFYGMTVSRNF 563 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,937,898 Number of extensions: 87597 Number of successful extensions: 243 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 236 Number of HSP's successfully gapped: 2 Length of query: 579 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 489 Effective length of database: 1,193,720 Effective search space: 583729080 Effective search space used: 583729080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)