BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0174.p
         (175 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313228|ref|YP_003777320.1| hypothetical protein Hsero_3941...   364   e-102
gi|300312821|ref|YP_003776913.1| hypothetical protein Hsero_3526...   300   3e-83

>gi|300313228|ref|YP_003777320.1| hypothetical protein Hsero_3941
           [Herbaspirillum seropedicae SmR1]
          Length = 454

 Score =  364 bits (935), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 171/175 (97%), Positives = 174/175 (99%)

Query: 1   MDEPTVFNGTMDRFDWKLVGKKEIYVAYNSFGANNFKANFDDIAKPDFVAENARRYELHR 60
           MDEPTVFNGTMDRFDWKLVGKKEIY+AYNSFGANNFKANFDDIAKPDFVAENARRYELHR
Sbjct: 280 MDEPTVFNGTMDRFDWKLVGKKEIYIAYNSFGANNFKANFDDIAKPDFVAENARRYELHR 339

Query: 61  VWVVEATVKPGVRHLAPKRTFYVDEDSWNLVLSDDYDAQNKLWKHREGYIIPVYETGACD 120
           VWVVEATVKPGVRHLAPKRTFYVDEDSWNLVLSDDYDAQNKLWKHREGYIIPVYETGACD
Sbjct: 340 VWVVEATVKPGVRHLAPKRTFYVDEDSWNLVLSDDYDAQNKLWKHREGYIIPVYETGACD 399

Query: 121 LAGFAQYNLAEGRYLMDSHSAGTGKDIRWETEVKDNPRLRDSFYSADNLRAISDR 175
           L+GFAQYNLAEGRYLMDSHSAGTGKDIRWETE KDNPRLRD+FYSADNLRAISDR
Sbjct: 400 LSGFAQYNLAEGRYLMDSHSAGTGKDIRWETEAKDNPRLRDNFYSADNLRAISDR 454


>gi|300312821|ref|YP_003776913.1| hypothetical protein Hsero_3526
           [Herbaspirillum seropedicae SmR1]
          Length = 453

 Score =  300 bits (769), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 139/175 (79%), Positives = 154/175 (88%)

Query: 1   MDEPTVFNGTMDRFDWKLVGKKEIYVAYNSFGANNFKANFDDIAKPDFVAENARRYELHR 60
           +DEP VFNGT+DRFDWKLVGKKE+YV Y SFGA +FKA F+D+A  +++AENARRYELHR
Sbjct: 279 LDEPMVFNGTIDRFDWKLVGKKEMYVPYGSFGATDFKAKFEDVAGEEYIAENARRYELHR 338

Query: 61  VWVVEATVKPGVRHLAPKRTFYVDEDSWNLVLSDDYDAQNKLWKHREGYIIPVYETGACD 120
           VWVVEATVK GVRHLAPKRTFYVDEDSWNLV +DDYDAQ KLWKHRE YIIPVYETG+CD
Sbjct: 339 VWVVEATVKAGVRHLAPKRTFYVDEDSWNLVAADDYDAQGKLWKHREAYIIPVYETGSCD 398

Query: 121 LAGFAQYNLAEGRYLMDSHSAGTGKDIRWETEVKDNPRLRDSFYSADNLRAISDR 175
            AGF QYNLAEGRY+ D HSAGTGKD+ WE + K NPR + SFYSADNLRAISDR
Sbjct: 399 QAGFTQYNLAEGRYVFDLHSAGTGKDMAWEVDGKGNPRAKASFYSADNLRAISDR 453


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 594,285
Number of extensions: 23805
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,245,805
Effective search space: 119597280
Effective search space used: 119597280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)