BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0173.p
         (284 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313228|ref|YP_003777320.1| hypothetical protein Hsero_3941...   458   e-130
gi|300312821|ref|YP_003776913.1| hypothetical protein Hsero_3526...   317   9e-88

>gi|300313228|ref|YP_003777320.1| hypothetical protein Hsero_3941
           [Herbaspirillum seropedicae SmR1]
          Length = 454

 Score =  458 bits (1179), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 221/227 (97%), Positives = 226/227 (99%)

Query: 6   MKRTILGLSLLAMGAALAHAASVQDLGSTLTPLGGDKAAGQGVPEWKAENVELPGWSYGK 65
           MKRTILGLS+LA+GA LAHAASVQDLG+TLTPLGGDKAAGQGVPEWKAENVELPGWSYGK
Sbjct: 1   MKRTILGLSILAVGATLAHAASVQDLGTTLTPLGGDKAAGQGVPEWKAENVELPGWSYGK 60

Query: 66  LRKDYFKYKDEKPTEVIDASNVDKYADHLTPGQVALIKQVKGYKMDIYPTHRYCAAPDFV 125
           LRKDYFKYKDEKPTEVIDASNVDKYADHLTPGQVALIKQVKGYKMDIYPTHRYCAAPDFV
Sbjct: 61  LRKDYFKYKDEKPTEVIDASNVDKYADHLTPGQVALIKQVKGYKMDIYPTHRYCAAPDFV 120

Query: 126 VENTKKNVADGKIGADGWSLAEANVPGIPFPLPKTGLEVMYNSKMRYRGVGVDFPNTITA 185
           VENTKKNVADGKIGADGWSLAEANVPGIPFPLPKTGLEVMYNSKMRYRG+GVDFPNTITA
Sbjct: 121 VENTKKNVADGKIGADGWSLAEANVPGIPFPLPKTGLEVMYNSKMRYRGLGVDFPNTITA 180

Query: 186 VSPRKGSNEWIKASQQLTLFYPSNVKGSTKLSTLGGVEFYTYVAYAS 232
           VSPRKGSNEWIKASQQLTLFYPSNVKGSTKLSTLGGVEFYTYVAY+S
Sbjct: 181 VSPRKGSNEWIKASQQLTLFYPSNVKGSTKLSTLGGVEFYTYVAYSS 227


>gi|300312821|ref|YP_003776913.1| hypothetical protein Hsero_3526
           [Herbaspirillum seropedicae SmR1]
          Length = 453

 Score =  317 bits (811), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 160/227 (70%), Positives = 189/227 (83%), Gaps = 1/227 (0%)

Query: 6   MKRTILGLSLLAMGAALAHAASVQDLGSTLTPLGGDKAAGQGVPEWKAENVELPGWSYGK 65
           MK T + ++ LA+ AA AHAA+  DLG++LTPLGGDKA G GVP+WK ENV LPGWSYGK
Sbjct: 1   MKITKMSVTALALAAAFAHAATPADLGASLTPLGGDKAGGNGVPDWKDENVTLPGWSYGK 60

Query: 66  LRKDYFKYKDEKPTEVIDASNVDKYADHLTPGQVALIKQVKGYKMDIYPTHRYCAAPDFV 125
           LR+D+FKYKD+K +E IDASNVDKYA  L+ GQ+ALIKQ+KGYKMD+YP+HRYC+APDFV
Sbjct: 61  LRRDFFKYKDDKKSETIDASNVDKYASKLSAGQIALIKQIKGYKMDVYPSHRYCSAPDFV 120

Query: 126 VENTKKNVADGKIGADGWSLAEANVPGIPFPLPKTGLEVMYNSKMRYRGVGVDFPNTITA 185
           V+NTKKN +  K+GADGWSLAEA VPGIPFPLPK+G EVMYNSKMRYRGV  ++ +TITA
Sbjct: 121 VDNTKKNTS-AKLGADGWSLAEAVVPGIPFPLPKSGEEVMYNSKMRYRGVAQEWKSTITA 179

Query: 186 VSPRKGSNEWIKASQQLTLFYPSNVKGSTKLSTLGGVEFYTYVAYAS 232
           VSPRKG +EWIKA  Q T+F+P   KGS  LSTL  VE+YTY AY S
Sbjct: 180 VSPRKGGSEWIKAGSQQTMFFPWAAKGSVNLSTLPPVEYYTYFAYNS 226


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 871,417
Number of extensions: 35261
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 284
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,222,130
Effective search space: 244426000
Effective search space used: 244426000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)