BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0170.p (127 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313230|ref|YP_003777322.1| methyl-accepting chemotaxis I (... 186 4e-49 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 93 6e-21 gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis tra... 89 1e-19 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 86 9e-19 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 86 1e-18 >gi|300313230|ref|YP_003777322.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 535 Score = 186 bits (473), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 104/129 (80%), Positives = 114/129 (88%), Gaps = 6/129 (4%) Query: 1 LAARETKALIHESVARIQTGARLVDRAGQTMQDIVAAVRSVSAIVAQISEASVTQSADIA 60 LAARETK LIHESVARIQ GARLVD+AGQTM++IVAAVRSVSAIVAQIS+AS+ QS DIA Sbjct: 409 LAARETKTLIHESVARIQAGARLVDQAGQTMEEIVAAVRSVSAIVAQISQASLAQSGDIA 468 Query: 61 EVEGAIRQLDDALQQNAALVEQSAAASESLRQQAGNLLGTVSVFRIAEGAQLLHASQSPP 120 EVEGAIRQLDDALQQNAALVEQSAAASESLRQQAGNLLGTVSVFRIA G ++ P Sbjct: 469 EVEGAIRQLDDALQQNAALVEQSAAASESLRQQAGNLLGTVSVFRIAAGP----VPETLP 524 Query: 121 SLA--LPLV 127 ++A LPL+ Sbjct: 525 AVASGLPLL 533 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 93.2 bits (230), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 61/126 (48%), Positives = 89/126 (70%), Gaps = 2/126 (1%) Query: 2 AARETKALIHESVARIQTGARLVDRAGQTMQDIVAAVRSVSAIVAQISEASVTQSADIAE 61 AA+E K LI++SV ++ G+RLV++AG TMQ++V++VR V+ IVA+IS AS Q+ I + Sbjct: 410 AAKEIKELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQ 469 Query: 62 VEGAIRQLDDALQQNAALVEQSAAASESLRQQAGNLLGTVSVFRIAEGAQLL--HASQSP 119 + AI Q+D QQNAALVE++AAA+ S++ QAG L+ VSVFR++E L+ +P Sbjct: 470 INLAITQMDQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRLSEREPLVRREIDVTP 529 Query: 120 PSLALP 125 S LP Sbjct: 530 SSPVLP 535 >gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 88.6 bits (218), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/119 (52%), Positives = 81/119 (68%) Query: 2 AARETKALIHESVARIQTGARLVDRAGQTMQDIVAAVRSVSAIVAQISEASVTQSADIAE 61 AARE K LI +SV ++Q+G+RLV +AG TM+++V +VR VS IV IS AS QS IA+ Sbjct: 433 AAREIKELIDDSVNKVQSGSRLVLQAGSTMEEVVTSVRRVSGIVRDISVASGEQSDGIAQ 492 Query: 62 VEGAIRQLDDALQQNAALVEQSAAASESLRQQAGNLLGTVSVFRIAEGAQLLHASQSPP 120 V AI +D QQNAALVE++AAAS+SLR+QA L VSVFR+ A+ + P Sbjct: 493 VNQAIGMMDQTTQQNAALVEEAAAASQSLREQAKGLAQAVSVFRLERSAEAPQPESTEP 551 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 85.9 bits (211), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 55/107 (51%), Positives = 83/107 (77%) Query: 2 AARETKALIHESVARIQTGARLVDRAGQTMQDIVAAVRSVSAIVAQISEASVTQSADIAE 61 AA+E K LI +SV +++TG++LV +AG TM+++V++VR V+ IV +IS AS QS+ I E Sbjct: 489 AAKEIKGLIDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGEISAASQEQSSGITE 548 Query: 62 VEGAIRQLDDALQQNAALVEQSAAASESLRQQAGNLLGTVSVFRIAE 108 V A+ Q+D+A QQNAALVEQ+AAA++SL++QA +L V+ F++ E Sbjct: 549 VGNAVNQMDEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKLDE 595 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 85.9 bits (211), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/109 (50%), Positives = 85/109 (77%) Query: 2 AARETKALIHESVARIQTGARLVDRAGQTMQDIVAAVRSVSAIVAQISEASVTQSADIAE 61 AA+E KALI +SV +++ G+ LV +AG TM+ +V++VRSV+ IVA+IS AS QS+ I E Sbjct: 412 AAKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEE 471 Query: 62 VEGAIRQLDDALQQNAALVEQSAAASESLRQQAGNLLGTVSVFRIAEGA 110 + A+ Q+D+ QQNAALVEQ+AAA++S+++QA L ++S+F++ +GA Sbjct: 472 INRAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGA 520 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.123 0.306 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 282,385 Number of extensions: 7758 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 61 Length of query: 127 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 52 Effective length of database: 1,264,745 Effective search space: 65766740 Effective search space used: 65766740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 125 (52.8 bits)