BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0156.p (325 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313240|ref|YP_003777332.1| AraC family transcription regul... 594 e-171 gi|300310610|ref|YP_003774702.1| AraC family transcription regul... 433 e-123 gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon... 125 7e-30 gi|300312820|ref|YP_003776912.1| AraC family transcription regul... 111 9e-26 gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon... 84 1e-17 >gi|300313240|ref|YP_003777332.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 594 bits (1531), Expect = e-171, Method: Compositional matrix adjust. Identities = 303/328 (92%), Positives = 311/328 (94%), Gaps = 3/328 (0%) Query: 1 MLQSIHRFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHG 60 MLQSIHRFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHG Sbjct: 1 MLQSIHRFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHG 60 Query: 61 EAPKDQICFAFPIAAPGAAHVQGREADEKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLF 120 EAP+DQICFAFPIAAPGAAHVQGREAD+KSILFLQGGEEFMFHMPMDTDLLSLTFDRDLF Sbjct: 61 EAPRDQICFAFPIAAPGAAHVQGREADDKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLF 120 Query: 121 EEHLHQMPDPDRISALLRQPVIKVPPKGLRACRERLLNLFSQSMLQIDGGQWQAN---AQ 177 EEHLHQMPDPDRI+ALL+QPVIKVPPKGLRACRERLL LFS +MLQ D G QA+ Q Sbjct: 121 EEHLHQMPDPDRIAALLKQPVIKVPPKGLRACRERLLTLFSHAMLQFDDGPRQADMPSVQ 180 Query: 178 AEQREQALESSLLGELLGLLSAPDSDPVRQMSTTRSYIVEKLHRQAIVDAANVPSIFEVC 237 QREQALESSLLGELLGLL APD DPVRQMSTTRSYIVEKLHRQ IVDAANVPSIFEVC Sbjct: 181 TLQREQALESSLLGELLGLLCAPDCDPVRQMSTTRSYIVEKLHRQTIVDAANVPSIFEVC 240 Query: 238 QRLQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEASIGDVASRWGFFHL 297 QRLQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEASIGD+ASRWGFFHL Sbjct: 241 QRLQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEASIGDIASRWGFFHL 300 Query: 298 SHFAEDYQELFGELPSQTARRVAQKLFQ 325 SHFAEDYQ LFGELPSQTARRV QK+FQ Sbjct: 301 SHFAEDYQALFGELPSQTARRVPQKIFQ 328 >gi|300310610|ref|YP_003774702.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 433 bits (1114), Expect = e-123, Method: Compositional matrix adjust. Identities = 221/318 (69%), Positives = 257/318 (80%), Gaps = 4/318 (1%) Query: 1 MLQSIHRFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHG 60 MLQS+ RFQDVH HAAAI W YAQISAGK+ESSL+QLST RCH FRERIN+RVVQ G Sbjct: 1 MLQSVLRFQDVHEHAAAISPWNLHYAQISAGKVESSLLQLSTPRCHVFRERINQRVVQQG 60 Query: 61 EAPKDQICFAFPIAAPGAAHVQGREADEKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLF 120 EAP++Q+CFAFP+AAPG AHVQGRE DE +LFLQGG+EFM H+P+DTDL ++TFDR LF Sbjct: 61 EAPREQVCFAFPVAAPGKAHVQGREVDEHCMLFLQGGDEFMCHLPIDTDLFAITFDRALF 120 Query: 121 EEHLHQMPDPDRISALLRQPVIKVPPKGLRACRERLLNLFSQSMLQIDGGQWQANAQAEQ 180 E L P+RI AL++QPV+KV + L ACRERLLN+F +ML I+ G + Q Q Sbjct: 121 EAQLEHTASPERIVALMKQPVVKVASQDLHACRERLLNIFYWAMLSIEDG----HGQHPQ 176 Query: 181 REQALESSLLGELLGLLSAPDSDPVRQMSTTRSYIVEKLHRQAIVDAANVPSIFEVCQRL 240 EQ LE SLL ELL LLSAPD RQ+ST RSYIV+KLHRQ + DA NVPSIFEVC+++ Sbjct: 177 HEQELELSLLAELLALLSAPDCGASRQISTIRSYIVDKLHRQTMNDAINVPSIFEVCEQM 236 Query: 241 QVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEASIGDVASRWGFFHLSHF 300 QVSRRTVQNSFQTV ETTP NYLRCVRLNGVRR L+ST+ ++ +IGD+ASRWGFFHLSHF Sbjct: 237 QVSRRTVQNSFQTVTETTPRNYLRCVRLNGVRRALMSTSAEQITIGDIASRWGFFHLSHF 296 Query: 301 AEDYQELFGELPSQTARR 318 AEDY+ LF ELPSQT RR Sbjct: 297 AEDYRALFCELPSQTIRR 314 >gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 125 bits (313), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 92/314 (29%), Positives = 150/314 (47%), Gaps = 25/314 (7%) Query: 9 QDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHGEAPKDQIC 68 +DV HA + W+Q Y QI+ G E L + + FRE ++ V Q + D Sbjct: 26 RDVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSDGLQIFREASSRAVRQSCQVWPDAYW 85 Query: 69 FAFPIAAPGAAHVQGREADEKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLFEE---HLH 125 F G + GR+ E ++ G EF P ++ + RD + L Sbjct: 86 FGIEARTTGM-RINGRQVGEDVVMTRPGACEFELVTPDAHEIYGIVVQRDALQASAARLG 144 Query: 126 QMPDPDRISALLRQPVIKVPPKGLRACRERLLNLFSQSMLQIDGGQWQANAQAEQREQAL 185 PD R+ + ++KV GL CR+++ ++L + G A+A + R++A+ Sbjct: 145 CQPDWQRLG---QAELLKVDHGGLEDCRQQI-----AALLAMAGQASGAHAALQLRQEAV 196 Query: 186 ESSLLGELLGLLSAPDSDPVRQMSTT----RSYIVEKLHRQAIVDAANVPSIFEVCQRLQ 241 L+ LL+ D + + R IV A+ + ++ +C+ + Sbjct: 197 -------LVALLAMLDEGEIEAEAGASFLRRRRIVNDAREFAMAHQDSPVTVPMLCEAVH 249 Query: 242 VSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEA--SIGDVASRWGFFHLSH 299 VSRRT+Q F+ V +P++YLR +RLNGVRR L ++A SIGD+A+ WGF + S Sbjct: 250 VSRRTLQYCFEDVLGMSPMSYLRSLRLNGVRRALCHGDGRQAVGSIGDIAAAWGFANFSQ 309 Query: 300 FAEDYQELFGELPS 313 F+ DY++LFG+ PS Sbjct: 310 FSCDYKKLFGQTPS 323 >gi|300312820|ref|YP_003776912.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 111 bits (277), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 88/327 (26%), Positives = 149/327 (45%), Gaps = 19/327 (5%) Query: 4 SIH--RFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHGE 61 S+H +F DV A+ + W+Q Y Q+ +G+ + +L + T RER N + + Sbjct: 7 SVHAVQFSDVDEQASMLTGWEQEYQQLGSGRFDGALGMVQTEDFCFIRERTNTALHERMV 66 Query: 62 APKDQICFAFPIAAPGAAHVQGREADEKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLFE 121 P Q+ ++ + GR + ++ L G +L+ ++ RDLF Sbjct: 67 PPPGQMVIGICNSSERGHLLNGRPLGQDQLIVLDGSRAHHIRTTGPIELMGISMQRDLFL 126 Query: 122 EHLHQMPDPDRISALLRQPVIKVPPKGLRACRERLLNLFSQSMLQIDGGQWQANAQAEQR 181 LH+ D + L V+++ P A L + FS + ++ Q + R Sbjct: 127 SQLHEQDDAS-VRKWLDLSVLQLDP----ATAGMLRHYFSLAFDLLNTAQGKTVHPISPR 181 Query: 182 EQALESSLLGELLGLLS----APDSDPVRQMSTTRSYIVEKLHRQAIVDAANVPSIFEVC 237 AL S+++ + LS + D + R IV+ A I +VC Sbjct: 182 --ALASTVISNVALALSLNHGSNDLESTLPSRQRRERIVQNAIDYMRAHAGEEIGILDVC 239 Query: 238 QRLQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQE------ASIGDVASR 291 + VSRRT+Q F+ + +PL YL+ +RLN RE+ T ++ A+IG++A+ Sbjct: 240 RATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRTGEDRAHDRHATIGNLAAL 299 Query: 292 WGFFHLSHFAEDYQELFGELPSQTARR 318 GF H S FA +Y+++FG LPS+T R Sbjct: 300 CGFNHPSRFASEYKKMFGVLPSETVLR 326 >gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 358 Score = 84.0 bits (206), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 2/108 (1%) Query: 210 TTRSYIVEKLHRQAIVDAANVPSIFEVCQRLQVSRRTVQNSFQTVAETTPLNYLRCVRLN 269 T ++++ R DA ++ +V L VSRR +Q F T + ++R RLN Sbjct: 230 TDHKRLIDQARRLMRGDAPERATMTQVAAHLGVSRRHLQTCFNTSVGIPAIEFVRAERLN 289 Query: 270 GVRRELLSTTHQ--EASIGDVASRWGFFHLSHFAEDYQELFGELPSQT 315 VR+ L+ E SIGD+A+ WGF+HLS FA DY+++FGELPS+T Sbjct: 290 QVRKALVEARRAGLEVSIGDIAADWGFWHLSRFAADYRDMFGELPSKT 337 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.134 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 869,537 Number of extensions: 30934 Number of successful extensions: 115 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 108 Number of HSP's successfully gapped: 7 Length of query: 325 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 240 Effective length of database: 1,217,395 Effective search space: 292174800 Effective search space used: 292174800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)