BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0151.p (1036 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 1854 0.0 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 1196 0.0 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 1015 0.0 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 1004 0.0 gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump pr... 623 e-179 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 1854 bits (4803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 949/1032 (91%), Positives = 998/1032 (96%) Query: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPSVTINATYPGATPQTMNDG 60 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPP+V+INATYPGATPQTMNDG Sbjct: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDG 60 Query: 61 VISLIERELSGVKNLLYFESSADTSGSAQITVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 VISLIERELSGVKNLLYFESSADTSG+AQI+VTFKPGTDPELAQVDVQNKLKAIEARLPQ Sbjct: 61 VISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 Query: 121 TVRQNGVTVESAASGFLLMVSLTSVDGRHDEIRLNDYLARNIVEELRRVDGVGRVQLFGA 180 TVRQNGVTVESAAS FLLMVSLTSVDGR+DE+RLNDYLARNIVEELRR++GVGRVQLFGA Sbjct: 121 TVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA 180 Query: 181 EQAMRIWIDPFKLNAFGLSVTDISTAISQQNAQIAPGRLGDTPTVPGQQIAVPLTVQGQL 240 EQAMRIW+DPFKLNA+GL+VTDISTAISQQNAQIAPGRLGD P V GQQIA+PLTVQGQL Sbjct: 181 EQAMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQL 240 Query: 241 QSPDQFASIVLKAKADGSRVLLGDVARVELGAQSYAFANREDGKPAGVAAVQLSPGANAV 300 QSP QFA+IVLKAKADGSRVLLGDVARVELGAQSYAFANRE+GKPAGVAAVQLSPGANAV Sbjct: 241 QSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAV 300 Query: 301 RTAAAIQARMEELRPSLPQGMQFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360 RTAAAIQARMEELRPSLPQGM FSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ Sbjct: 301 RTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360 Query: 361 NVRYTVIPAIVAPIALLGTLAVMLVAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420 NVRYTVIPAIVAPIALLGTLAVM +AGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM Sbjct: 361 NVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420 Query: 421 AEEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSLAMAVSILF 480 A EGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFS+AMAVSILF Sbjct: 421 AHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILF 480 Query: 481 SAFLALSLTPALCATLLKPVAPGHHEKRGFFGAFNRAFARLTRRYESLLGRLIARGLRMM 540 SAFLALSLTPALCATLL+PV GHH+KRGFFGAFNRAF RLT RYES LGRLIARGLRMM Sbjct: 481 SAFLALSLTPALCATLLRPVPAGHHDKRGFFGAFNRAFNRLTARYESALGRLIARGLRMM 540 Query: 541 LLYGALSLLLVLGLRALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYLKTRE 600 L+Y ALS LLV+G++ALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYLK RE Sbjct: 541 LVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYLKGRE 600 Query: 601 DIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGSTAAIEAQHAQAAMENGVDGMVMSL 660 DIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGST+A EA AQAAME+GVDGMVMSL Sbjct: 601 DIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGSTSAAEAMAAQAAMESGVDGMVMSL 660 Query: 661 LPPAIEELGNSSGFAMRLQDRANQGHAALKAAEAQLLALAAHSPKLAGVYADGLPPGASL 720 LPPAIEELGNSSGFAMRLQDRANQG+AALKAAEAQLLALAA S KL+GVY+DGLP GAS+ Sbjct: 661 LPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRKLSGVYSDGLPAGASV 720 Query: 721 QLNVDRHKAAALGVSFASISDTLSAAMGSFYVNDFPNAGRMQQVIIQAQAQSRMQIEDLM 780 QL +DRHKAAALGVSF+SISDTLSAAMGSFYVNDFPNAGRMQQVI+QAQA +RMQ+ED+M Sbjct: 721 QLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQLEDVM 780 Query: 781 KLYVRNQNGGMVPLSEMVQAQWQVVPTQLQRYQGFPAVRISGSAAPGVASGDAMAEMESL 840 KLYVRNQ+GGMVPL+E+V+A W+ PTQLQRYQGFPAVRISGSAAPGVASG+AMAEME L Sbjct: 781 KLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVASGEAMAEMERL 840 Query: 841 AKQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWRIPLSVMLVVPL 900 A+QLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESW IPLSVMLVVPL Sbjct: 841 AQQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWSIPLSVMLVVPL 900 Query: 901 GLIGAVAAVMLRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRAEGAGLVEAAIKAA 960 GL+GAVAAV+LRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLR+EG GLVEAAIKA+ Sbjct: 901 GLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRSEGMGLVEAAIKAS 960 Query: 961 VLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFVPLFFVL 1020 VLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFVP+FFVL Sbjct: 961 VLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFVPVFFVL 1020 Query: 1021 VLGAGRRRSAQG 1032 VLG +R + +G Sbjct: 1021 VLGCAQRLARKG 1032 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 1196 bits (3095), Expect = 0.0, Method: Compositional matrix adjust. Identities = 596/1035 (57%), Positives = 765/1035 (73%), Gaps = 6/1035 (0%) Query: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPSVTINATYPGATPQTMNDG 60 M +FFIDRP+FAWV+A+FI+L G +A++ LP+++YP++APP++ + ATYPGAT QT++D Sbjct: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 Query: 61 VISLIERELSGVKNLLYFESSADTSGSAQITVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 V SLIE+E++G L Y ES + +G QIT+TF P T+P+LA VDVQN+LK +EARLP Sbjct: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120 Query: 121 TVRQNGVTVESAASGFLLMVSLTSVDGRHDEIRLNDYLARNIVEELRRVDGVGRVQLFGA 180 V Q GV V + S FLL + L+S DG+ D + L DYL+RN++ E++RV GVG+ QLFG Sbjct: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 Query: 181 EQAMRIWIDPFKLNAFGLSVTDISTAISQQNAQIAPGRLGDTPTVPGQQIAVPLTVQGQL 240 E+AMRIWIDP KL L+ D++ AI QNA +A G LG P+ QQIA + V GQL Sbjct: 181 ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 Query: 241 QSPDQFASIVLKAKADGSRVLLGDVARVELGAQSYAFANREDGKPAGVAAVQLSPGANAV 300 SP+QF +I+L+A A+G+ V L DVARVE+G QSY + R DGKP+ VQLSP ANA+ Sbjct: 241 TSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 Query: 301 RTAAAIQARMEELRPSLPQGMQFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360 TA A+ +MEEL P G+++++PY+T+ FVKISI++VV+TLIEA+VLVFLVM+LFLQ Sbjct: 301 GTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 Query: 361 NVRYTVIPAIVAPIALLGTLAVMLVAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420 N+RYT+IP IV P+ALLGT A +L+ G+S+NVLTMFGMVLAIGI+VDDAIVVVENVERIM Sbjct: 361 NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 Query: 421 AEEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSLAMAVSILF 480 +EEGL P +AT KAMG+I+GA+IGITLVL AVFIPMA GG+VG IYRQFSL+M S++F Sbjct: 421 SEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVF 480 Query: 481 SAFLALSLTPALCATLLKPVAPG-HHEKRGFFGAFNRAFARLTRRYESLLGRLIARGLRM 539 S +A +LTPALCAT+LKPV G HHEK+GFFG FNR F Y+ ++G ++ + R Sbjct: 481 SVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAGRY 540 Query: 540 MLLYGALSLLLVLGLRALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYLKTR 599 M++Y + + L LP++FLP EDQGY +T+ QLP A+T RT V Q E Y Sbjct: 541 MIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYYLKD 600 Query: 600 EDIGANLSVLGFGFSGSGPNAAMAFTELKDWKER-KGSTAAIEAQHAQAAMENGVDGMVM 658 + ++VLG+ FSG+G NAA+ FT LKDW +R K +A A A A D +V Sbjct: 601 PAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKSQSADAIAGKAFGAFSQIKDAIVF 660 Query: 659 SLLPPAIEELGNSSGFAMRLQDRANQGHAALKAAEAQLLALAAHSPKLAGVYADGLPPGA 718 L PP I ELGN++GF RLQDRA GH AL A Q+L +A+ S LAGV +GL Sbjct: 661 PLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGLEDAP 720 Query: 719 SLQLNVDRHKAAALGVSFASISDTLSAAMGSFYVNDFPNAGRMQQVIIQAQAQSRMQIED 778 LQL++DR KA ALGV F++I+ LS A+GS YVNDFPN GR Q+VI+QA A+ R+Q ED Sbjct: 721 QLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRLQPED 780 Query: 779 LMKLYVRNQNGGMVPLSEMVQAQWQVVPTQLQRYQGFPAVRISGSAAPGVASGDAMAEME 838 L LY RN +G MVP S V A+W P QL RY G+PA++I+G AAPG ++G+AMAEME Sbjct: 781 LTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMAEME 840 Query: 839 SLAKQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWRIPLSVMLVV 898 S +LPPGF WTGQSL+E+ S QAP L ALS++ VFLVLAALYES IPL+VMLVV Sbjct: 841 SFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLVV 900 Query: 899 PLGLIGAVAAVMLRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRAEGAGLVEAAIK 958 PLG++GA+ V LR MPNDV+FKVGMI V+GLSAKNAILI+EFA+ L+A+G GL+EA ++ Sbjct: 901 PLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIEATLE 960 Query: 959 AAVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFVPLFF 1018 A LR RPI+MTSLAF LGV+PL +ASGA + +QRAIGTGV GGM++ATVLAV VP+FF Sbjct: 961 AVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLVPIFF 1020 Query: 1019 VLV----LGAGRRRS 1029 V+V G+ R+R Sbjct: 1021 VVVRKIFKGSERQRK 1035 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 1015 bits (2625), Expect = 0.0, Method: Compositional matrix adjust. Identities = 515/1036 (49%), Positives = 713/1036 (68%), Gaps = 5/1036 (0%) Query: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPSVTINATYPGATPQTMNDG 60 M RFFIDRPIFAWV+A+ I+L G++++ L + +YP +APP V I ATY GA+ +T+ D Sbjct: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 Query: 61 VISLIERELSGVKNLLYFESSADTSGSAQITVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 V +IE+++ G+ NL Y +S+ ++GSA +++TF GT+P++AQ+ VQNKL+ + ARLPQ Sbjct: 61 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 Query: 121 TVRQNGVTVESAASGFLLMVSLTSVDGRHDEIRLNDYLARNIVEELRRVDGVGRVQLFGA 180 V+ NGVTV A++ L+++SLTS D R I + D+++ + +++ RV+GVG V FG Sbjct: 121 AVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT 180 Query: 181 EQAMRIWIDPFKLNAFGLSVTDISTAISQQNAQIAPGRLGDTPTVPGQQIAVPLTVQGQL 240 AMRIWIDP KL + L +DI++A+ QN +++ G +G P PGQQI +T + +L Sbjct: 181 NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 Query: 241 QSPDQFASIVLKAKADGSRVLLGDVARVELGAQSYAFANREDGKPAGVAAVQLSPGANAV 300 +PD+F +I++K+ DGS V L DVARVELG +SY A++++GKP+ A+QL+ GANA+ Sbjct: 241 TTPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANAL 300 Query: 301 RTAAAIQARMEELRPSLPQGMQF--SLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLF 358 TA A++ ++ EL P P M+ ++ Y+T PFV++S+++VV+TLIEA+VLV L+MYLF Sbjct: 301 ATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLF 360 Query: 359 LQNVRYTVIPAIVAPIALLGTLAVMLVAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVER 418 LQN+R T IPAI P+ LLGT ++ + GYS+N LTMFGMVLAIG++VDDAIVVVENVER Sbjct: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 Query: 419 IMAEEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSLAMAVSI 478 +M+EE L P+EAT K+M EITGA++GI +VL+AVFIPMA GGS GVIYRQFS+ + ++ Sbjct: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 Query: 479 LFSAFLALSLTPALCATLLKPVAPGHHEKRGFFGAFNRAFARLTRRYESLLGRLIARGLR 538 S +AL+LTPALCATLLKP A GH ++ FF FNR+F R RY+ + L+ RG R Sbjct: 481 ALSVMVALTLTPALCATLLKPHAGGHVQQGRFFTWFNRSFDRSATRYQGGVAGLLKRGKR 540 Query: 539 MMLLYGALSLLLVLGLRALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYLKT 598 +L+Y +++ + + LP++FLPEEDQG M QLP AT E+TA V + Y Sbjct: 541 GLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFMN 600 Query: 599 R-EDIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGS--TAAIEAQHAQAAMENGVDG 655 + E + + L+++G G G+ N A AF LKDW++R G+ +A+ + A A + Sbjct: 601 KPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIRGA 660 Query: 656 MVMSLLPPAIEELGNSSGFAMRLQDRANQGHAALKAAEAQLLALAAHSPKLAGVYADGLP 715 V + PPA+ LG SSGF + L+D GH AL A Q L LA + LA V GL Sbjct: 661 RVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTGLD 720 Query: 716 PGASLQLNVDRHKAAALGVSFASISDTLSAAMGSFYVNDFPNAGRMQQVIIQAQAQSRMQ 775 L++ +D KA AL ++ + I+ TL+ AMG YVNDF + GR+++V +Q + RMQ Sbjct: 721 DTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRMQ 780 Query: 776 IEDLMKLYVRNQNGGMVPLSEMVQAQWQVVPTQLQRYQGFPAVRISGSAAPGVASGDAMA 835 +DL + YVRN MVP + + +QW P+ L+RY G + I G A GV+SG AMA Sbjct: 781 ADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMA 840 Query: 836 EMESLAKQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWRIPLSVM 895 E+E L QLP G WTG S QERLS QAPML A+S+L VFL LAALYESW +P +V+ Sbjct: 841 EVEKLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVI 900 Query: 896 LVVPLGLIGAVAAVMLRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRAEGAGLVEA 955 L VPLG+IG V + M NDV+F+VG++T +GLSAKNAILIVEFA+QL G L EA Sbjct: 901 LAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWEA 960 Query: 956 AIKAAVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFVP 1015 ++A LRLRPILMTSLAF GV+PL +ASGA + ++RAIGTGV GGM+SAT+L + FVP Sbjct: 961 TLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFVP 1020 Query: 1016 LFFVLVLGAGRRRSAQ 1031 LF+ L+ RR+A+ Sbjct: 1021 LFYYLIGAWLDRRAAR 1036 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 1004 bits (2595), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/1040 (50%), Positives = 706/1040 (67%), Gaps = 6/1040 (0%) Query: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPSVTINATYPGATPQTMNDG 60 M RFFIDRPIFAWV+A+ ++L G++++ LPIA+YP++APP++ I A YPGA+ +T+ D Sbjct: 1 MARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 Query: 61 VISLIERELSGVKNLLYFESSADTSGSAQITVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 V +IE+++ G+ L Y S++++SGS IT+TF+ GT+P+ AQV VQNKL LP Sbjct: 61 VTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPS 120 Query: 121 TVRQNGVTVESAASGFLLMVSLTSVDGRHDEIRLNDYLARNIVEELRRVDGVGRVQLFGA 180 V+Q G+TV +A+ FL +++ TS DG L+DY+A N+ + + RV+GVG LFG+ Sbjct: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS 180 Query: 181 EQAMRIWIDPFKLNAFGLSVTDISTAISQQNAQIAPGRLGDTPTVPGQQIAVPLTVQGQL 240 + AMRIW+DP KLN++GL+ D+ AI QNAQ++ G+LG P QQI +T Q +L Sbjct: 181 QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRL 240 Query: 241 QSPDQFASIVLKAKADGSRVLLGDVARVELGAQSYAFANREDGKPAGVAAVQLSPGANAV 300 ++ DQF +IVL+ G++V L DVAR+ELG++SY R +GKPA A++L+ GANA+ Sbjct: 241 RTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 Query: 301 RTAAAIQARMEELRPSLPQGMQFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360 T AI R+ EL P GM+ PY+T PFV+ISI++VV+TLIEA+VLVFLVMYLFLQ Sbjct: 301 DTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQ 360 Query: 361 NVRYTVIPAIVAPIALLGTLAVMLVAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420 N R T+IP I P+ LLGT V+ V G+++N LTMF MVLAIG++VDDAIVVVENVER+M Sbjct: 361 NFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 AEEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSLAMAVSILF 480 +EEGL P++AT K+MG+I+GA++G+ LVL AVF+PMA GS GVIYRQFS+ + ++ Sbjct: 421 SEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL 480 Query: 481 SAFLALSLTPALCATLLKPVAPGHH-EKRGFFGAFNRAFARLTRRYESLLGRLIARGLRM 539 S +AL LTPALCATLLKP A GH GFFG FNR F R RY+ ++ ++ RG R Sbjct: 481 SVLVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRGWRY 540 Query: 540 MLLYGALSLLLVLGLRALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERY--LK 597 M Y L L+V G LP FLP+EDQG QLP+ AT RT + Q E++ + Sbjct: 541 MAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHFLVD 600 Query: 598 TREDIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGSTAAIE--AQHAQAAMENGVDG 655 +E + +V GF F+GSG N AF +LK W ERKG ++ A A AA N D Sbjct: 601 QKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAAFANIRDA 660 Query: 656 MVMSLLPPAIEELGNSSGFAMRLQDRANQGHAALKAAEAQLLALAAHSPKLAGVYADGLP 715 V + PPA+ ELGN++GF + L+D AN GHAAL A QLL +L V +GL Sbjct: 661 RVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKRLVAVRPNGLE 720 Query: 716 PGASLQLNVDRHKAAALGVSFASISDTLSAAMGSFYVNDFPNAGRMQQVIIQAQAQSRMQ 775 +L+VD KA ALGV+ + I+DT++ A GS YVNDF + GR+++V++Q AQ RM Sbjct: 721 DTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQGDAQYRML 780 Query: 776 IEDLMKLYVRNQNGGMVPLSEMVQAQWQVVPTQLQRYQGFPAVRISGSAAPGVA-SGDAM 834 D+ + YVRN G MVP S A W +L+RY G P++ I G A PG A SG+AM Sbjct: 781 PSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGEAM 840 Query: 835 AEMESLAKQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWRIPLSV 894 A +E+ ++PPG WTG SLQE+ S+ + +L +S+L+VFL LAALYESW +P SV Sbjct: 841 AIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSV 900 Query: 895 MLVVPLGLIGAVAAVMLRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRAEGAGLVE 954 +LVVPLG+ GA+ ML NDV+F+VG++T IGL+ KNAILIVEFA+ L G LVE Sbjct: 901 ILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKSLVE 960 Query: 955 AAIKAAVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFV 1014 A ++A +RLRPILMTSLAF LGV+P++L SGA A Q A+GT V GGM+S TVLAV FV Sbjct: 961 ATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFV 1020 Query: 1015 PLFFVLVLGAGRRRSAQGVQ 1034 PLFFV+++ R+ A Q Sbjct: 1021 PLFFVIIMTLFGRKPADAPQ 1040 >gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1071 Score = 623 bits (1606), Expect = e-179, Method: Compositional matrix adjust. Identities = 419/1054 (39%), Positives = 625/1054 (59%), Gaps = 45/1054 (4%) Query: 3 RFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPSVTINATYPGATPQTMNDGVI 62 +FFIDRPIFA V+++ ++L GV+AM QLPI+ YP V PPSV + A YPGA P+ + + V Sbjct: 5 KFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIAETVA 64 Query: 63 SLIERELSGVKNLLYFESSADTSGSAQITVTFKPGTDPELAQVDVQNKLKAIEARLPQTV 122 S +E +++GV+N+LY +S A++ G+ ITV F+ G DP+ AQ VQN++ RLP+ V Sbjct: 65 SPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRLPEDV 124 Query: 123 RQNGVTVESAASGFLLMVSLTSVDGRHDEIRLNDYLARNIVEELRRVDGVGRVQLFGA-E 181 ++ GVT ++ ++V LTS D R+D L +Y N+ + L R+ GVG V LFG+ Sbjct: 125 QRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLFGSGN 184 Query: 182 QAMRIWIDPFKLNAFGLSVTDISTAISQQNAQIAPGRLGDTPTVPGQQIAVPLTVQGQLQ 241 AMR+W+DP K+ GL+ TD+ AI +QN Q+A G +G +P+ P + + + QG+L+ Sbjct: 185 YAMRVWLDPNKVAQRGLTATDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQGRLK 244 Query: 242 SPDQFASIVLKAKADGSRVLLGDVARVELGAQSYAFANREDGKPAGVAAVQLSPGANAVR 301 + +F I+LKA DG+ LGDVARVEL A Y + D KPA + +PGANA+ Sbjct: 245 TEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGANALD 304 Query: 302 TAAAIQARMEELRPSLPQGMQFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQN 361 + ++A M+EL P + +S+ Y+ FV+ SI+ VV TL+EA+ LV +V+ +FLQ Sbjct: 305 VSTQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVIIFLQT 364 Query: 362 VRYTVIPAIVAPIALLGTLAVMLVAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIMA 421 R ++IP + P++++GT ++ML GY++N L++FGMVLAIGI+VDDAIVVVENVER + Sbjct: 365 WRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVERNIG 424 Query: 422 EEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSLAMAVSILFS 481 GL PR+AT +AM E++G II I L L AVF+P+A G G Y+QF++ +A+S + S Sbjct: 425 -AGLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTVIS 483 Query: 482 AFLALSLTPALCATLLKPVAPGHHEKRGFFGAFNRAFARLTRRYESLLG----------- 530 AF +L+L+PAL A LLK GH +K + LTR+ + LG Sbjct: 484 AFNSLTLSPALAALLLK----GHGDKPDW----------LTRQMDRFLGGFFIRFNRFFN 529 Query: 531 -----------RLIARGLRMMLLYGALSLLLVLGLRAL-PSAFLPEEDQGYFMTSFQLPA 578 +I R M +Y L L LG+ + P F+P +D+ Y + QLP Sbjct: 530 RASDNYGHGVTGVIKRKGATMGVY-VLLLAATLGISYIVPGGFVPGQDKQYLVAFAQLPN 588 Query: 579 DATTERTARAVDQFERYLKTREDIGANLSVLGFGFSG--SGPNAAMAFTELKDWKERKGS 636 A+ +R+ + + + + + ++ G +G + +A + F LK ++ERK Sbjct: 589 GASIDRSEEVMRKMSDIMLKEPGVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSK 648 Query: 637 TAAIEAQHAQAAMENGV--DGMVMSLLPPAIEELGNSSGFAMRLQDRANQGHAALKAAEA 694 + A A + G + PP + LG GF M+++DR G+A L A Sbjct: 649 DLSGNAIAASLNKKFGSIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQ 708 Query: 695 QLLALAAHSPKLAGVYADGLPPGASLQLNVDRHKAAALGVSFASISDTLSAAMGSFYVND 754 + AA P L +++ L + +DR KA LG+ + +T+ +GS YVND Sbjct: 709 AFMKAAAKEPALGPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVND 768 Query: 755 FPNAGRMQQVIIQAQAQSRMQIEDLMKLYVRNQNGGMVPLSEMVQAQWQVVPTQLQRYQG 814 F GR+ QV QA A R + ED+ +L RN G MVPLS +V+ + P + RY G Sbjct: 769 FNRFGRVYQVRAQADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNG 828 Query: 815 FPAVRISGSAAPGVASGD-AMAEMESLAKQLPPGFAVAWTGQSLQERLSAAQAPMLMALS 873 + A I+G APG +S A A LP G WT + Q+ L+ + +S Sbjct: 829 YTAADINGGPAPGYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAGNAGVWVFPIS 888 Query: 874 MLVVFLVLAALYESWRIPLSVMLVVPLGLIGAVAAVMLRDMPNDVFFKVGMITVIGLSAK 933 +L+VFLVLAALYES +PL+V+L+VP+ ++ A+ V L N++F ++G++ ++GLSAK Sbjct: 889 VLLVFLVLAALYESLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAK 948 Query: 934 NAILIVEFARQLRAEGAGLVEAAIKAAVLRLRPILMTSLAFALGVVPLMLASGASAETQR 993 NAILIVEFAR+L +G V+AAI+A+ LRLRPILMTS+AF +GVVPL+ +SGA +E + Sbjct: 949 NAILIVEFARELEMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRH 1008 Query: 994 AIGTGVFGGMVSATVLAVLFVPLFFVLVLGAGRR 1027 A+G VF GM+ T+ + P+F+VL+ RR Sbjct: 1009 AMGIAVFFGMLGVTLFGLFLTPVFYVLLRTIDRR 1042 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,809,032 Number of extensions: 109386 Number of successful extensions: 604 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 519 Number of HSP's successfully gapped: 15 Length of query: 1036 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 941 Effective length of database: 1,170,045 Effective search space: 1101012345 Effective search space used: 1101012345 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)