BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0150.p (251 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313245|ref|YP_003777337.1| two component response regulato... 447 e-127 gi|300311273|ref|YP_003775365.1| two component response regulato... 193 1e-50 gi|300313896|ref|YP_003777988.1| two component transcription res... 150 1e-37 gi|300310718|ref|YP_003774810.1| phosphate regulon two-component... 132 2e-32 gi|300310592|ref|YP_003774684.1| phosphate regulon two-component... 126 1e-30 >gi|300313245|ref|YP_003777337.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 447 bits (1151), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/231 (95%), Positives = 229/231 (99%) Query: 21 GALILIAEDAPEIAEILAAYLARSGMRSVHAADGARALELHLSLKPDLVLLDIQMPQVNG 80 GALILIAEDAPEIAEILAAYLAR+GMRSVHAADGARALELHL+LKPDLVLLDIQMPQVNG Sbjct: 37 GALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALKPDLVLLDIQMPQVNG 96 Query: 81 WQVLAQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSL 140 WQVL+QIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSL Sbjct: 97 WQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSL 156 Query: 141 PREEREDRRILRAPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFSRA 200 PREER+DR++LR PPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFSRA Sbjct: 157 PREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFSRA 216 Query: 201 ELLATCLPEGDTLERTVDSHVSKLRKKLEDLGLAGIPVSIRGVGYRFQQGG 251 ELLA+CLPEGDTLERTVDSHVSKLRKKLEDLG+AGIPVSIRGVGYRFQQG Sbjct: 217 ELLASCLPEGDTLERTVDSHVSKLRKKLEDLGIAGIPVSIRGVGYRFQQGS 267 >gi|300311273|ref|YP_003775365.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 193 bits (491), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 109/227 (48%), Positives = 146/227 (64%), Gaps = 1/227 (0%) Query: 24 ILIAEDAPEIAEILAAYLARSGMRSVHAADGARALELHLSLKPDLVLLDIQMPQVNGWQV 83 ILI ED + A+IL AYL R G ++ AADG +ALEL+ +PDLVLLD+ +P ++G +V Sbjct: 6 ILIVEDDLDGADILDAYLNREGFQTRQAADGHQALELYRRWRPDLVLLDVMLPGLSGNEV 65 Query: 84 LAQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSL-PR 142 LA IRQ +T VI++TA+ + L GADDYVVKP++P EVVARV AVLRR L P Sbjct: 66 LAAIRQHASTAVIMVTAVADQPRLINSLLYGADDYVVKPYHPGEVVARVHAVLRRMLRPV 125 Query: 143 EEREDRRILRAPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFSRAEL 202 + +LR +D + + +G L LT TE LLA + AP R+FSRAEL Sbjct: 126 SGAAQQAVLRHGALTLDPDAALATVDKDGHPQALTLTRTELNLLALMMAAPTRMFSRAEL 185 Query: 203 LATCLPEGDTLERTVDSHVSKLRKKLEDLGLAGIPVSIRGVGYRFQQ 249 LA PE D +ER VD+H+ LR+KLE G+ + V++RG+GYRF+ Sbjct: 186 LAHSQPESDAMERVVDAHLHNLRRKLEQAGIREVVVTVRGLGYRFRN 232 >gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 150 bits (379), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 97/236 (41%), Positives = 146/236 (61%), Gaps = 10/236 (4%) Query: 17 APATGALILIAEDAPEIAEILAAYLARSGMRSVHAADGARALELHLSLKPDLVLLDIQMP 76 AP A ILI ED P++AE+L YLA +G + H A G AL+ + +PDL+LLDI +P Sbjct: 11 APPASADILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLP 70 Query: 77 QVNGWQVLAQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVK-PFNPAEVVARVEAV 135 ++GW++ Q+R + PV++LTA ++ D+L GL +GADDY+ K PF+P E+VARV+++ Sbjct: 71 GMDGWEICRQLRTFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSM 130 Query: 136 LRRSLPREEREDRRILRAPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQLARAPRR 195 LRR+ ++R + R+ ID +H+ A + G L LT E +LL A AP + Sbjct: 131 LRRNALVQQRTAQAPARS-LLHIDDVRHQ--ASVRG--EALNLTPLELRLLKTFASAPGQ 185 Query: 196 VFSRAELLATCLPEGDTL-ERTVDSHVSKLRKKLEDL--GLAGIPVSIRGVGYRFQ 248 VFSR +LL + ++ +R VD+H+ LR+KLE G I ++ GVGY F+ Sbjct: 186 VFSREQLLNHLHDDDRSVTDRAVDTHIKNLRRKLEPCFPGHNAI-QAVYGVGYCFE 240 >gi|300310718|ref|YP_003774810.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 132 bits (333), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 129/228 (56%), Gaps = 13/228 (5%) Query: 24 ILIAEDAPEIAEILAAYLARSGMRSVHAADGARALELHLSLKPDLVLLDIQMPQVNGWQV 83 IL+ ED P IAE+L + +G + A D A+A + P +VLLD +P +G + Sbjct: 8 ILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSGLVL 67 Query: 84 LAQIRQRDNT---PVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSL 140 L ++R+ T PVI+LTA + DK+ GL GADDYV KPF+P E+VARV+A+LRR Sbjct: 68 LNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 Query: 141 PREEREDRRILRAPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFSRA 200 P + L+ ID E+ +V + V +L EFKLL L P R+FSRA Sbjct: 128 PEIGSQ---ALKYRDISIDVERRQVSVADKPV----LLDQAEFKLLRYLVAHPERIFSRA 180 Query: 201 ELLATCLPEGDTL-ERTVDSHVSKLRKKLEDLGLAGIPVSIRGVGYRF 247 +LL + + ERTVD H+ +LRK L D LA ++RG+GY+ Sbjct: 181 QLLDKVWGDHTFIEERTVDVHIMRLRKSLGD--LAHYVQTVRGMGYKL 226 >gi|300310592|ref|YP_003774684.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 126 bits (317), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 127/238 (53%), Gaps = 23/238 (9%) Query: 17 APATGALILIAEDAPEIAEILAAYLARSGMRSVHAADGARALELHLSLKPDLVLLDIQMP 76 +P ILI ED P IAE++A L +G S ++ A A + P LVLLD +P Sbjct: 17 SPIPMTTILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLP 76 Query: 77 QVNGWQVLAQIR---QRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVE 133 +G +L++IR Q VI+LTA + DK+ GL GADDY+ KPF+P E+ AR++ Sbjct: 77 DRSGLHLLSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIK 136 Query: 134 AVLRRSLPREEREDRRILRAPPFVIDFEQHEVV---AEIEGVSHTLVLTLTEFKLLAQLA 190 A+LRR P +E ++ A P +D V A I+ + H E+KLL Sbjct: 137 ALLRRKSPEHAQE---VMSAGPITLDPASCSVSLSGARID-IGH------AEYKLLKFFL 186 Query: 191 RAPRRVFSRAELLATCLPEGDTL---ERTVDSHVSKLRKKLEDLGLAGIPVSIRGVGY 245 P RVFSR++LL GD + ERTVD HV +LRK L D + ++R VGY Sbjct: 187 AHPDRVFSRSQLLDRVW--GDHVVIEERTVDVHVLRLRKALRDAEY--LIKTVRSVGY 240 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 740,972 Number of extensions: 29038 Number of successful extensions: 268 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 253 Number of HSP's successfully gapped: 40 Length of query: 251 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 168 Effective length of database: 1,226,865 Effective search space: 206113320 Effective search space used: 206113320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)