BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0149.p (362 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313246|ref|YP_003777338.1| two component transmembrane sen... 572 e-164 gi|300313895|ref|YP_003777987.1| two-component system sensor his... 149 3e-37 gi|300311272|ref|YP_003775364.1| two component sensor histidine ... 138 6e-34 gi|300309362|ref|YP_003773454.1| transmembrane sensory transduct... 101 7e-23 gi|300312357|ref|YP_003776449.1| cobalt/zinc/cadmium resistance ... 89 6e-19 >gi|300313246|ref|YP_003777338.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 572 bits (1474), Expect = e-164, Method: Compositional matrix adjust. Identities = 287/362 (79%), Positives = 319/362 (88%), Gaps = 1/362 (0%) Query: 1 MKPGIDLLTLWRGKGLARQIISSIAILALTIMLMVLLGSYAFYSTLFIFLPTALSAPDSW 60 MK G ++WR KGLARQI++++ +LA+ IMLMVLLGSYAFYST+FIF PTA+SAPDSW Sbjct: 1 MKHGT-FFSIWRSKGLARQIVTAVVVLAVAIMLMVLLGSYAFYSTMFIFFPTAMSAPDSW 59 Query: 61 LPSPAEWGWIFVTTLAGVAIAVWVAIRLSRRILTPLNSVATSLRRVAQGDLAARAAADRQ 120 LPSP EWGWI VTTL G++IA+WVA+RLSRRILTPLNSVATSLRRVAQGDL+ARAAA+RQ Sbjct: 60 LPSPVEWGWILVTTLIGLSIALWVAVRLSRRILTPLNSVATSLRRVAQGDLSARAAAERQ 119 Query: 121 PLDEASQLISDFNAMAERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLADGVFQPDP 180 PLDEA QLI+DFNAMAERLERVQQERIFWNAAIAHELRTPVTILRGRLQGL+DGVFQP+P Sbjct: 120 PLDEAWQLINDFNAMAERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLSDGVFQPEP 179 Query: 181 ALFSSLLVQVEGLGRLIEDLRIVGLAESGHLRIQLQQADLRQEIMTVLKACESALHDKGF 240 ALFSSLL QVEGLGRLIEDLRIVGLAESGHLR+QLQ+ DL+ +IMTVLKACE AL +KGF Sbjct: 180 ALFSSLLAQVEGLGRLIEDLRIVGLAESGHLRVQLQETDLQADIMTVLKACEPALQEKGF 239 Query: 241 TLTLALGAERPACDPVRIRQALLALLENALQHATPGPLRISTLVVDGQHCLRVEDSGPGL 300 L L G +R CDPVRIRQALLALLEN LQHA+PGPLRIST + G H L VEDSGPG+ Sbjct: 240 RLLLETGVQRSRCDPVRIRQALLALLENVLQHASPGPLRISTRSLAGMHSLCVEDSGPGI 299 Query: 301 SASDAQRIFDAFERGPRSGDAAAKGSGLGLAVVRAIASAHGGTVDCQPSPLGGACFELRW 360 +ASDAQ IFDAF RG R+GDA KGSGLGLAVVR IASAH GT DC+ S LGGACFE+RW Sbjct: 300 AASDAQMIFDAFHRGARAGDAQQKGSGLGLAVVRTIASAHHGTADCRASELGGACFEVRW 359 Query: 361 PK 362 P Sbjct: 360 PH 361 >gi|300313895|ref|YP_003777987.1| two-component system sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 149 bits (377), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 147/284 (51%), Gaps = 4/284 (1%) Query: 72 VTTLAGVAIAVWVAIRLSRRILTPLNSVATSLRRVAQGDLAARAAADRQPLDEASQLISD 131 + + V +A ++ +R+S + PL VA + R+A GD A R + DE L D Sbjct: 176 IIAVVAVMLAAFLVVRISGVLTRPLTRVARATHRLASGDYAIRVEVESG--DEVGMLAQD 233 Query: 132 FNAMAERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLADGVFQPDPALFSSLLVQVE 191 FN +A LER ++ R + A ++HELRTP+ IL G+L+ L DGV QPD SL +VE Sbjct: 234 FNQLAMTLERNEKLRREFMADVSHELRTPLAILNGQLEALEDGVLQPDAQTLRSLKSEVE 293 Query: 192 GLGRLIEDLRIVGLAESGHLRIQLQQADLRQEIMTVLKACESALHDKGFTLTLALGAERP 251 L +L+ DL + LA++G L + DL + +G L+ L A P Sbjct: 294 HLNKLVGDLYDLSLADAGALTYRRADIDLAPLLRDSAALYSDRFSQRGMRLSCELPASMP 353 Query: 252 AC-DPVRIRQALLALLENALQHATP-GPLRISTLVVDGQHCLRVEDSGPGLSASDAQRIF 309 D R++Q L L EN+L++ G L++ + L +DS PG+ R+F Sbjct: 354 VHGDAARLQQLLSNLFENSLRYTDAGGRLQVHAHLQQQHWHLVFDDSEPGVPPEVMARLF 413 Query: 310 DAFERGPRSGDAAAKGSGLGLAVVRAIASAHGGTVDCQPSPLGG 353 + F R S + A+ G+GLGLA+ R I AH GT+ SPLGG Sbjct: 414 ERFFRVEASRNRASGGAGLGLAICRRIVDAHQGTIGASASPLGG 457 >gi|300311272|ref|YP_003775364.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 138 bits (348), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 113/295 (38%), Positives = 155/295 (52%), Gaps = 2/295 (0%) Query: 69 WIFVTTLAGVAIAVWVAIRLSRRILTPLNSVATSLRRVAQGDLAARAAADRQPLDEASQL 128 W + L + + V + LS R+ L++VA + RR+A GD +ARA + +Q L Sbjct: 98 WFSLLVLIALPLIVGAGLMLSLRLSRHLDAVAVAARRLAAGDFSARALSCKQVPAALDAL 157 Query: 129 ISDFNAMAERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLADGVFQPDPALFSSLLV 188 + D N MAERLER ++E +AAIAHELRTP+T + RLQG+ DG+F P S ++ Sbjct: 158 MRDVNEMAERLERRERELHASSAAIAHELRTPLTAAKARLQGIMDGIFDRSPQQLSMIMR 217 Query: 189 QVEGLGRLIEDLRIVGLAESGHLRIQLQQADLRQEIMTVLKACESALHDKGFTLTLALGA 248 Q++ L RLI DL ++ L +G L + Q LR + L +L + L Sbjct: 218 QLDQLNRLISDLYLLSLVSAGQLALVRSQFQLRPLLEERLAWAAPSLRLLPMSTALYCCE 277 Query: 249 ERP-ACDPVRIRQALLALLENALQHATPGP-LRISTLVVDGQHCLRVEDSGPGLSASDAQ 306 P D R+ QA+ L++NAL++A G L IS + DGQ + VED GPG + + Sbjct: 278 HLPLNADRDRLGQAISILIDNALRYAASGKLLTISAGLHDGQIHIDVEDDGPGFAPEHLE 337 Query: 307 RIFDAFERGPRSGDAAAKGSGLGLAVVRAIASAHGGTVDCQPSPLGGACFELRWP 361 D F R S A GSGLGLAV AI AHGG + P GGA L P Sbjct: 338 LACDRFWRAEHSRSRHAGGSGLGLAVAVAICEAHGGKLSVHNRPAGGARMHLELP 392 >gi|300309362|ref|YP_003773454.1| transmembrane sensory transduction histidine kinase for cobalt/zinc/ cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 467 Score = 101 bits (252), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 91/290 (31%), Positives = 146/290 (50%), Gaps = 9/290 (3%) Query: 77 GVAIAVWVAIRLSRRILTPLNSVATSLRRVAQGDLAARAAADRQPLDEASQLISDFNAMA 136 G +A+ ++ L R L PL ++A R V+ L R P E +++ FN M Sbjct: 177 GALLAILMSYFLVRSGLRPLRTMAAQTRAVSANRLDTRLDLQAAP-RELHEIVESFNEML 235 Query: 137 ERLERVQQERIFWNAAIAHELRTPVTILRGRLQ---GLADGVFQPDPALFSSLLVQVEGL 193 +RL R Q+ ++A +AH++RTP+ L + Q G G+ + AL SS + + E L Sbjct: 236 DRLHRSFQQLSQFSADLAHDVRTPLNNLMVQTQVALGKPRGIDEYQ-ALLSSNIEEYERL 294 Query: 194 GRLIEDLRIVGLAESGHLRIQLQQADLRQEIMTVLKACESALHDKGFTLTLALGAERPAC 253 R++E + + AE+ H+ +Q Q+ D+ QE+ + E + D+ + GA R Sbjct: 295 SRMMESMLFLARAENAHVVLQWQELDVAQELTRIADYFE-GIADEAQVRLVVQGAGRLQA 353 Query: 254 DPVRIRQALLALLENALQHATP--GPLRISTLVVDGQHCLRVEDSGPGLSASDAQRIFDA 311 D +R+A+ L+ NA+++ TP G +R+ + V + G G+ A +R+FD Sbjct: 354 DATLLRRAVGNLVANAIRY-TPADGVIRLQVDAAGDGMEISVSNPGAGIPAEQLERLFDR 412 Query: 312 FERGPRSGDAAAKGSGLGLAVVRAIASAHGGTVDCQPSPLGGACFELRWP 361 F R S +A SGLGLA+VR+I HGG SP F LR+P Sbjct: 413 FYRADPSRSSAGGSSGLGLAIVRSIMMLHGGQASVTSSPGQLTVFSLRFP 462 >gi|300312357|ref|YP_003776449.1| cobalt/zinc/cadmium resistance two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 77/274 (28%), Positives = 138/274 (50%), Gaps = 11/274 (4%) Query: 95 PLNSVATSLRRVAQGDLAARAAADRQPLDEASQLISDFNAMAERLERVQQERIFWNAAIA 154 PL +++ ++ L+AR + P E ++ FNAM +RLE ++ +A Sbjct: 201 PLEAMSQRAAQITPDHLSARLDQEGMPA-ELRRVALSFNAMLDRLEAGYAHLAQFSGDLA 259 Query: 155 HELRTPVTILRGRLQGLADGVFQPDP--ALFSSLLVQVEGLGRLIEDLRIVGLAESGHLR 212 HE+RTP+ +L G+ Q P+ + S + +++ L R++E++ + A+ L Sbjct: 260 HEIRTPINVLMGQSQVALGQRRSPEEYEQVLESNVEELQRLSRIVENILFLAQADHAALA 319 Query: 213 IQLQQADLRQEIMTVLKACESALHDKGFTLTLALGAERPACDPVRIRQALLALLENALQH 272 ++ DL +E+ + E ++G + A + + + R+ + L+ NA+++ Sbjct: 320 VERNALDLAEELGRITDYFEGIADERGMRFDVQ-AAGQCQANLIMWRRVVSNLVINAVRY 378 Query: 273 A-TPGPLRISTLVVDGQHC-LRVEDSGPGLSASDAQRIFDAFERGPRSGDAAAKGSGLGL 330 +RI DG+ + VE+ ++A R+FD F RG RS A + +GLGL Sbjct: 379 GRAESTIRI-LAESDGEGSRIMVENRSEDVTAQAMARMFDRFYRGDRSRSAFTESNGLGL 437 Query: 331 AVVRAIASAHGGT--VDCQPSPLGGACFELRWPK 362 A+V+AI + HGGT V+C P+P G F LR+P Sbjct: 438 AIVKAIMALHGGTAAVEC-PAP-GWIRFSLRFPS 469 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,090,009 Number of extensions: 42383 Number of successful extensions: 275 Number of sequences better than 1.0e-08: 38 Number of HSP's gapped: 245 Number of HSP's successfully gapped: 38 Length of query: 362 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 276 Effective length of database: 1,212,660 Effective search space: 334694160 Effective search space used: 334694160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)