BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0148.p
         (101 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis dom...   151   1e-38
gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra...    96   4e-22
gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra...    94   2e-21
gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra...    93   3e-21
gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra...    92   5e-21

>gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 568

 Score =  151 bits (381), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/97 (81%), Positives = 88/97 (90%)

Query: 5   IAXSVSKVDAGSALVNQAGSTMDEVVASVQRVTEIIAGISSASQEQSAGVEQIQQAISQM 64
           I  SVSKV+AGS LVN+AGSTM EVV SVQRVTEII GIS+ASQEQ++G+EQIQQAI+QM
Sbjct: 462 IDNSVSKVEAGSTLVNEAGSTMREVVESVQRVTEIITGISNASQEQASGIEQIQQAINQM 521

Query: 65  DNVTQQNAALVEQASAAAESMQEQAHKLSGLVGAFKT 101
           D VTQQNAALVEQASAA+ESMQ QAHKL+ LVGAFKT
Sbjct: 522 DQVTQQNAALVEQASAASESMQMQAHKLTDLVGAFKT 558


>gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 515

 Score = 96.3 bits (238), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 78/96 (81%)

Query: 5   IAXSVSKVDAGSALVNQAGSTMDEVVASVQRVTEIIAGISSASQEQSAGVEQIQQAISQM 64
           I  SV KV AGSALV +AGSTM EVVASV+RVT+++A IS+A+QEQS G+ ++  AI+QM
Sbjct: 418 IDDSVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQM 477

Query: 65  DNVTQQNAALVEQASAAAESMQEQAHKLSGLVGAFK 100
           D  TQQNAALVEQA+AAA+S++ QA  L+ +VG FK
Sbjct: 478 DETTQQNAALVEQAAAAADSLKGQASNLAAVVGKFK 513


>gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 581

 Score = 94.0 bits (232), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 81/96 (84%)

Query: 5   IAXSVSKVDAGSALVNQAGSTMDEVVASVQRVTEIIAGISSASQEQSAGVEQIQQAISQM 64
           IA SV KV+ GSALV QAG+TM++VV+SV+ VT+I+A IS+AS EQS+G+E+I +A++QM
Sbjct: 420 IADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQM 479

Query: 65  DNVTQQNAALVEQASAAAESMQEQAHKLSGLVGAFK 100
           D  TQQNAALVEQA+AAA+SMQEQA +L+  +  FK
Sbjct: 480 DEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFK 515


>gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 597

 Score = 93.2 bits (230), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/96 (66%), Positives = 79/96 (82%)

Query: 5   IAXSVSKVDAGSALVNQAGSTMDEVVASVQRVTEIIAGISSASQEQSAGVEQIQQAISQM 64
           I  SVS+VD GS LV QAG+TM EVVASV+RVT+++A IS+AS EQS G+EQI  AI+QM
Sbjct: 417 IDDSVSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQM 476

Query: 65  DNVTQQNAALVEQASAAAESMQEQAHKLSGLVGAFK 100
           D VTQQNAALVE+A+AAA+S+QEQ+ +LS  V  FK
Sbjct: 477 DQVTQQNAALVEEAAAAAQSLQEQSTRLSATVSVFK 512


>gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 609

 Score = 92.4 bits (228), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/95 (68%), Positives = 80/95 (84%)

Query: 5   IAXSVSKVDAGSALVNQAGSTMDEVVASVQRVTEIIAGISSASQEQSAGVEQIQQAISQM 64
           I  SV+KVD GS LV QAG+TM EVVASV+RVT+I+  ISSASQEQSAG+ ++ +AI+QM
Sbjct: 418 IDDSVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQM 477

Query: 65  DNVTQQNAALVEQASAAAESMQEQAHKLSGLVGAF 99
           D  TQQNAALVEQA+AAA+S+Q+QA  L+GLVG F
Sbjct: 478 DEGTQQNAALVEQAAAAAQSLQDQAATLAGLVGRF 512


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.305    0.116    0.278 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 197,806
Number of extensions: 5137
Number of successful extensions: 211
Number of sequences better than 1.0e-08: 62
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 62
Length of query: 101
Length of database: 1,619,870
Length adjustment: 70
Effective length of query: 31
Effective length of database: 1,288,420
Effective search space: 39941020
Effective search space used: 39941020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 123 (52.0 bits)