BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0143.p
         (617 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313250|ref|YP_003777342.1| 4-amino-4-deoxy-L-arabinose tra...   876   0.0  
gi|300310191|ref|YP_003774283.1| undecaprenyl-phosphate-4-amino-...    67   4e-12

>gi|300313250|ref|YP_003777342.1| 4-amino-4-deoxy-L-arabinose
           transferase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 584

 Score =  876 bits (2263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/583 (77%), Positives = 497/583 (85%)

Query: 34  MFLFDSLNEGKTSTSRSAQPVSAAGGQALPARLAWLLLILAGAAWLLPGVFGHGPWKQDE 93
           MFL  S    K   S SA P S  G +A  AR  WLLL+LAG AWLLPG+FGHGPWKQDE
Sbjct: 1   MFLIKSPAINKVGPSVSATPASTYGERATFARFGWLLLVLAGLAWLLPGIFGHGPWKQDE 60

Query: 94  TYTFGMIHHMLVSGEYLVPTNAGQPFMEKPPLYYWTAALLAKLAYPLLPYHEGARLASVL 153
           TYTFG+IHHMLVSGEYLVPTNAGQPFMEKPPLYYWTA LLAKL YPLLPYHEGARLASVL
Sbjct: 61  TYTFGVIHHMLVSGEYLVPTNAGQPFMEKPPLYYWTAMLLAKLLYPLLPYHEGARLASVL 120

Query: 154 YNLVTLVFVARIAKMMWGQRSLMSLPVLATLALFAGTPGMVKHAHDMFTDVALVTGGVMA 213
           YNLVTLVFVARIA++MW +R ++SLPVL T+ALFAG+PGM+KHAHDMFTDVALVTGG MA
Sbjct: 121 YNLVTLVFVARIAQLMWNERRVLSLPVLGTVALFAGSPGMIKHAHDMFTDVALVTGGAMA 180

Query: 214 TYGLLAIALNEERRTPAWSAAFWFGLGVGITEMTKGLFVPLTFAATAMAIGVMVPACRSR 273
            YGLLAIALNEERR P+WSAAFWFGLGVGIT+MTKGLFVPLTFAATAMA+GV+V  CRS 
Sbjct: 181 IYGLLAIALNEERRAPSWSAAFWFGLGVGITQMTKGLFVPLTFAATAMAVGVLVRPCRSL 240

Query: 274 SYWKMVGTAVLVSLPFFVIWPALLAQHSMPLFMEWFWDNNVGRFFGFSVKKLGSDNDHTV 333
           SYWKMVG AVLVSLPFFV+WPALLAQHS+PLFMEWFWDNNVGRFFGFSV KLGSDNDHTV
Sbjct: 241 SYWKMVGAAVLVSLPFFVVWPALLAQHSVPLFMEWFWDNNVGRFFGFSVYKLGSDNDHTV 300

Query: 334 ILRALGGFALPGSVLALVALGSGDWRQVGTSKVALPLAFGAISLAVLQSSATARQLYLLP 393
           ILRAL GFALPGSVLA++AL +GDWRQ G+ +VALPLAF AISLAVLQSSATARQLYLLP
Sbjct: 301 ILRALIGFALPGSVLAVLALATGDWRQTGSPRVALPLAFAAISLAVLQSSATARQLYLLP 360

Query: 394 VLLPLVMLGARALPRLPALANLAWDWFSRLAFGALAVGIWATYIVSTWPADQHQPIAFMG 453
           VLLPL +LGARA+ RLP   +L WDWFSR+AFG LA  IWA Y+VS+ PA  H  I FMG
Sbjct: 361 VLLPLALLGARAIARLPNAFHLGWDWFSRIAFGVLAAAIWAIYVVSSLPAADHHWIDFMG 420

Query: 454 KWLPLSFVTPIQPLAVLAAGAMSILWIASLGLLSRAGQWRGAFSWFGGITLMWGLAFTLL 513
           +WLPL+FVTP+QPLA+ AA  MS+LW+  LG L  AGQWRGA SWF GITLMWGLAFTLL
Sbjct: 421 QWLPLNFVTPLQPLALAAAVGMSVLWLWGLGQLRLAGQWRGALSWFAGITLMWGLAFTLL 480

Query: 514 LPWADYGKSYEYVYADLQTKIGPAWQEGDCMASQALGESEAPMLYYYTGILHQPIDGGRH 573
           LPWADYGKSYE+VY DL+ +I   WQ+GDCMAS+ LGESEAPMLYYYTGILHQPIDG   
Sbjct: 481 LPWADYGKSYEFVYTDLKQQIAAQWQDGDCMASENLGESEAPMLYYYTGILHQPIDGVYQ 540

Query: 574 TACRWLIQEMPDAGKRPHGHWTLFWEGRRDGDEGQLFKIYERA 616
           T CRW++ E P     P G W LFWEGRRDGD+GQL K+Y RA
Sbjct: 541 TQCRWVLLETPGNTPLPQGQWKLFWEGRRDGDDGQLLKVYRRA 583


>gi|300310191|ref|YP_003774283.1|
           undecaprenyl-phosphate-4-amino-L-arabinose--lipid A
           4-amino-L-arabinosyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 574

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 119/270 (44%), Gaps = 21/270 (7%)

Query: 359 RQVGTSKVALPLAF-GAISLAVLQSSATARQLYLLPVLLPLVMLGARALPRLPALANLAW 417
           RQ+G+  +ALPLAF   I+L VL +      + L  +   L +L A  LP +   A  A 
Sbjct: 314 RQLGSLHIALPLAFLIPITLLVLMNIHREEGMLLPLLPA-LAILAAFGLPTMKRGAINAV 372

Query: 418 DWFSRLAFGALAVGIWATYIVST--WPADQHQPIAFMGKWLPLSFVTPIQPLAVLAAGAM 475
           DWFS +     A  IW  +I     WPA   +    +       F      +A+ A  A 
Sbjct: 373 DWFSVMTLTTSAAFIWIGWIAKETGWPAQIARNAYKLAPGFKPGFAWISLAIAIAATIAW 432

Query: 476 SILWIASLGLLSRAGQ-WRGAFSWFGGITLMWGLAFTLLLPWADYGKSYEYVYADLQTKI 534
            +  +    +  R    WR      GG+ L W L  TL LPW +YGKSY  V   +++K+
Sbjct: 433 IV--VVHWRISRRPSVLWRAVVLSSGGVILCWVLLMTLWLPWVNYGKSYAGVAEQIESKL 490

Query: 535 GPAWQEGDCMASQALGESEAPMLYYYTGILHQPIDGGRHTACRWLIQE----MPDAG--- 587
           G   Q   C+ +  +G ++     Y+  +      G R   C +L+ +      DA    
Sbjct: 491 GSVKQ---CVQTN-VGPAQRASFAYFGNVRFADEHGQR---CDYLLLQDDISNQDAALML 543

Query: 588 KRPHGHWTLFWEGRRDGDEGQLFKIYERAH 617
           ++  G W + WEGRR  D  + F++Y R+ 
Sbjct: 544 RQYPGAWRMVWEGRRPSDRDERFRLYRRSK 573


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,885,105
Number of extensions: 78874
Number of successful extensions: 370
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 2
Length of query: 617
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 526
Effective length of database: 1,188,985
Effective search space: 625406110
Effective search space used: 625406110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)