BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0141.p
         (255 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313252|ref|YP_003777344.1| phytanoyl-CoA dioxygenase [Herb...   478   e-136

>gi|300313252|ref|YP_003777344.1| phytanoyl-CoA dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  478 bits (1230), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/254 (90%), Positives = 240/254 (94%)

Query: 1   MSNPLSPAQVAFFREQGYLLLKGMVPDALRERLLAVTQDHLQRAVAPLEYEAEVGYEGAP 60
           MS PLS  QVAFFREQGYLLLKGMVP  LRER+LAVT+DHLQRAVAPLEYEAEVGYEGAP
Sbjct: 1   MSKPLSSTQVAFFREQGYLLLKGMVPADLRERMLAVTRDHLQRAVAPLEYEAEVGYEGAP 60

Query: 61  VSLEAEGGRTARRLRAAWQRDPVYREWAADPQLVAMLHQLFEEPVRLTLAHHNCIMTKHP 120
            SLEAEGGRTARRLRAAWQRDPVYREWA    LVA+LHQLF+EPV +TLAHHNC+MTKHP
Sbjct: 61  ASLEAEGGRTARRLRAAWQRDPVYREWAGSRALVAILHQLFDEPVCITLAHHNCVMTKHP 120

Query: 121 AFGTATGWHRDIRYWSFPRNELISVWLALGAETPENGALKFIPGSHKLKLQPEQMDELDF 180
           AFGTATGWHRDIRYWSFPRNELISVWLALGAETPENGALKFIPGSHKLKLQPEQMDELDF
Sbjct: 121 AFGTATGWHRDIRYWSFPRNELISVWLALGAETPENGALKFIPGSHKLKLQPEQMDELDF 180

Query: 181 LRPDVAANQALFAQGIALSLEPGDVVLFHSGLFHAAGRNDSEQVKCSAVFAYHGKSNPPL 240
           LRPDVAANQALFAQGIALSLEPGDVVLFHSGLFHAAGRNDS+QVKCSAVFAYHG SNPPL
Sbjct: 181 LRPDVAANQALFAQGIALSLEPGDVVLFHSGLFHAAGRNDSDQVKCSAVFAYHGASNPPL 240

Query: 241 PGTRSAASEDVALD 254
            GTRSAASED+ L+
Sbjct: 241 AGTRSAASEDLPLE 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 886,135
Number of extensions: 37461
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,226,865
Effective search space: 211020780
Effective search space used: 211020780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)