BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0138.p
         (342 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313255|ref|YP_003777347.1| sugar phosphate isomerase [Herb...   617   e-178

>gi|300313255|ref|YP_003777347.1| sugar phosphate isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 342

 Score =  617 bits (1590), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 305/342 (89%), Positives = 325/342 (95%)

Query: 1   MSVTDDKTTPASFSAGAARRAIELARQTLQIEADAILALKDRLRDDSADPLALAVQTLLQ 60
           MSVTDDKTTPASFSAGAARRAIELARQTLQIEADAILALK+RL DD+++PLA AV  LLQ
Sbjct: 1   MSVTDDKTTPASFSAGAARRAIELARQTLQIEADAILALKNRLGDDASEPLAQAVHLLLQ 60

Query: 61  CEGRAVVSGIGKSGHVGRKIAATLASTGTPSLFMHPAEAAHGDLGMVTARDVFIAISNSG 120
           C GRAVVSGIGKSGH+GRKIAATLASTGTPSLFMHPAEAAHGDLGMVT  DVFIAISNSG
Sbjct: 61  CNGRAVVSGIGKSGHIGRKIAATLASTGTPSLFMHPAEAAHGDLGMVTPNDVFIAISNSG 120

Query: 121 ETAELLAIVPIVKRMGAVIIAMTGNDQSTLAKLSAVHLNVGVAQEACTLNLAPTASTTAT 180
           ET EL+AI+PIVKRMGAVIIAMTGND S+LA+++ VHLNVGV +EACTLNLAPTASTTAT
Sbjct: 121 ETGELMAIMPIVKRMGAVIIAMTGNDNSSLARMANVHLNVGVDKEACTLNLAPTASTTAT 180

Query: 181 LAMGDALAVSLLDARGFVEEDFARSHPGGALGRRLLTHVRDVMRSGEAIPAVRPDVSLSA 240
           LAMGDALAVSLLDARGF+EEDFARSHPGGALGRRLLTHVRDVMRSG+AIPAV PDVSLS 
Sbjct: 181 LAMGDALAVSLLDARGFLEEDFARSHPGGALGRRLLTHVRDVMRSGDAIPAVSPDVSLSQ 240

Query: 241 ALMEITRKGMAMTAVVDEQFRPVGVFTDGDLRRLLERGQDFSKFYIADVMHANPQTVNQD 300
           ALMEITRKGMAMTAVVD  FRP+GVFTDGDLRRLLERGQDFS+F IA++MHANP+TVNQD
Sbjct: 241 ALMEITRKGMAMTAVVDADFRPIGVFTDGDLRRLLERGQDFSQFRIAEIMHANPRTVNQD 300

Query: 301 QLAVDAVQLMEQFRINQLLVTDAAGVLTGALHIHDLTRAKVI 342
           QLAVDAVQLME+FRINQLLVTDA GVLTGALHIHDLTRAKVI
Sbjct: 301 QLAVDAVQLMEEFRINQLLVTDAQGVLTGALHIHDLTRAKVI 342


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 982,218
Number of extensions: 39286
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,212,660
Effective search space: 310440960
Effective search space used: 310440960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)