BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0134.p (228 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313259|ref|YP_003777351.1| ABC transporter ATPase [Herbasp... 439 e-124 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 145 4e-36 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 142 2e-35 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 141 4e-35 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 135 2e-33 >gi|300313259|ref|YP_003777351.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 247 Score = 439 bits (1129), Expect = e-124, Method: Compositional matrix adjust. Identities = 220/228 (96%), Positives = 225/228 (98%) Query: 1 VVRDVSMELRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGEIDLDGASISRMPIHKRAT 60 VVRDVSME+RSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGEIDLDG ISR+ IHKRAT Sbjct: 20 VVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGEIDLDGEPISRLAIHKRAT 79 Query: 61 MGLSYLPQEASVFRKLTVEDNIRAVLELRREEGKPLSRDEIEGRLNNLLHELQIEKLRES 120 +GLSYLPQEASVFRKLTVEDNIRAVLELR+E+GKPLSRDEIEGRLNNLLHELQIEKLRES Sbjct: 80 LGLSYLPQEASVFRKLTVEDNIRAVLELRQEDGKPLSRDEIEGRLNNLLHELQIEKLRES 139 Query: 121 QALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKERGIGVLIT 180 QALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKERGIGVLIT Sbjct: 140 QALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKERGIGVLIT 199 Query: 181 DHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYLGEHFRM 228 DHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYLGEHFRM Sbjct: 200 DHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYLGEHFRM 247 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 145 bits (365), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 129/234 (55%), Gaps = 11/234 (4%) Query: 2 VRDVSMELRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGEIDLDGASISRMPIHKRATM 61 V VS+ ++ EV ++GPNGAGKTT F I G GEI LDGASI+R P H+ A Sbjct: 24 VDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEIMLDGASIARQPSHQVAQQ 83 Query: 62 GLSYLPQEASVFRKLTVEDNIRAVLE----------LRREEGKPLSRDEIEGRLNNLLHE 111 GL Q +F+ +TV +N+ L + S E R L + Sbjct: 84 GLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPAYRKSEQEALQRAAYWLDQ 143 Query: 112 LQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQRIV-RFL 170 L + L +A +LS G +RRVEIAR + T PR +LLDEP AG++P E+ +++ R Sbjct: 144 LGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGLNPQEKQELSQLIDRLR 203 Query: 171 KERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYLGE 224 +E G+ VL+ +H++ +GI DR ++ G + +G PE++ ++E V + YLGE Sbjct: 204 REHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSDERVIKAYLGE 257 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 142 bits (359), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 132/234 (56%), Gaps = 10/234 (4%) Query: 1 VVRDVSMELRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGEIDLDGASISRMPIHKRAT 60 V++ V+ +R GE+ GL+GPNGAGKTT F +I GL+ + G I + I + HK Sbjct: 17 VLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRFNDDDIGAVAPHKITE 76 Query: 61 MGLSYLPQEASVFRKLTVEDNIRAVLE----------LRREEGKPLSRDEIEGRLNNLLH 110 G++ Q VF+++T+ +N+ + L G + E R LL Sbjct: 77 RGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFRNAEKEARERALELLS 136 Query: 111 ELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFL 170 ++++ A SLS GE+R++E ARALAT P+ +LLDEP AG++P E+ + + Sbjct: 137 WVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGMNPAEKTELMSEIVNI 196 Query: 171 KERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYLGE 224 K+RG + + +H++R +G+C+R ++N G ++A G P++I N+ V YLG+ Sbjct: 197 KQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQEVIEAYLGK 250 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 141 bits (356), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 133/223 (59%), Gaps = 10/223 (4%) Query: 1 VVRDVSMELRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGEIDLDGASISRMPIHKRAT 60 +++ VS+++ +GEVV LLG NGAGKTT+ IVG+VP G + +G IS +P +K A Sbjct: 17 ILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVLFEGQLISGLPSYKIAA 76 Query: 61 MGLSYLPQEASVFRKLTVEDNIRAVLELRREEGKPLSRDEIEGRLNNLLHELQIEKLRES 120 G+ +P+ +F+ LTVE+N+ + R+E L +EI L ++ R++ Sbjct: 77 RGVCLVPEHRGIFKLLTVEENL--TMAARKESAWGL--EEIYAIFPRL------KERRKN 126 Query: 121 QALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKERGIGVLIT 180 LSGGE++ + IARAL T PR ++LDEP G+ P+ V EI +R +K G+ +++ Sbjct: 127 GGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIKATGMSIILV 186 Query: 181 DHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYLG 223 + N+ + DR YI+ QG ++ G+ E +A+E V+ YLG Sbjct: 187 EQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLG 229 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 135 bits (341), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 73/216 (33%), Positives = 129/216 (59%), Gaps = 6/216 (2%) Query: 1 VVRDVSMELRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGEIDLDGASISRMPIHKRAT 60 ++ + +E+R+GEVV L+G NGAGK+T+ ++GL+ G+I L G I ++ H+RA Sbjct: 20 ILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQIRLAGRDIGKLAPHQRAR 79 Query: 61 MGLSYLPQEASVFRKLTVEDNIRAVLELRREEGKPLSRDEIEGRLNNLLHELQIEKLRES 120 +GL Y+P++ +F +L+V +N LE R+ +P + L L L + + Sbjct: 80 LGLGYVPEDRRIFTELSVLEN----LETGRQPPRPGAPHWTPQALFELFPNL--GAMPQR 133 Query: 121 QALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQRIVRFLKERGIGVLIT 180 +SGGE++ + IAR L +PR +LLDEP G+ P+ V ++ +++ LK GI +L+ Sbjct: 134 LGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQELKRSGIAILLC 193 Query: 181 DHNVRETLGICDRAYIINQGTVLASGNPEEIIANES 216 + N+ +CDR Y+++QG ++A+G P + A++ Sbjct: 194 EQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQQ 229 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.140 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 718,638 Number of extensions: 31193 Number of successful extensions: 507 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 307 Number of HSP's successfully gapped: 150 Length of query: 228 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 146 Effective length of database: 1,231,600 Effective search space: 179813600 Effective search space used: 179813600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)