BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0127.p
         (373 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313265|ref|YP_003777357.1| pyruvate dehydrogenase E1 compo...   736   0.0  
gi|300310785|ref|YP_003774877.1| pyruvate dehydrogenase E1 compo...   406   e-114

>gi|300313265|ref|YP_003777357.1| pyruvate dehydrogenase E1
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 893

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/366 (96%), Positives = 359/366 (98%)

Query: 1   MSRPSDSDIPKDIDLDAQETQEWLQALQSVLAEAGPERARFLLSRLSAAAQQWGVNWRDA 60
           MSRPSDSDI +DID+D+QETQEWLQALQSVLAEAGPERARFLLSRLSAAAQQWGVNWRDA
Sbjct: 1   MSRPSDSDIARDIDIDSQETQEWLQALQSVLAEAGPERARFLLSRLSAAAQQWGVNWRDA 60

Query: 61  RNTPYVNTIRPEQEPPFPGGSDAQAIEERIASIMRWNALAMVVRANRAYGELGGHIASFA 120
           RNTPYVNTIRPEQEPPFPGGSDAQAIEERIASIMRWNALAMVVRANRAYGELGGHIASFA
Sbjct: 61  RNTPYVNTIRPEQEPPFPGGSDAQAIEERIASIMRWNALAMVVRANRAYGELGGHIASFA 120

Query: 121 SAADLFEVGFNHFFRARDAQFAGDVVYFQPHSAPGIYARAFLEGALSEEDLAYYRREIEA 180
           SAADLFEVGFNHFFRARD QFAGDVVYFQPHSAPGIYARAFLEGALSE+DLAYYRREIEA
Sbjct: 121 SAADLFEVGFNHFFRARDEQFAGDVVYFQPHSAPGIYARAFLEGALSEDDLAYYRREIEA 180

Query: 181 KRVGRQGLSSYPHPWLMPHFWQFPTGSMGIGPINAIYQARFLRYMEHRGLLQDQGRKVWG 240
           KRVGRQGLSSYPHPWLMP FWQFPTGSMGIGPINAIYQARFLRYMEHRGLLQDQGRKVWG
Sbjct: 181 KRVGRQGLSSYPHPWLMPQFWQFPTGSMGIGPINAIYQARFLRYMEHRGLLQDQGRKVWG 240

Query: 241 VFGDGEMDEPESLAALSLASREKLDNLIFVVNCNLQRLDGPVRGNGHIVDELETLFAGAG 300
           VFGDGEMDEPESLAALSLASREKLDNLIFVVNCNLQRLDGPVRGNGHIVDELETLFAGAG
Sbjct: 241 VFGDGEMDEPESLAALSLASREKLDNLIFVVNCNLQRLDGPVRGNGHIVDELETLFAGAG 300

Query: 301 WNVIKLLWGSDWDGLFARDKDGELVDALNRTVDGQLQTFAANDGAFNRQHFFGQTPGTRA 360
           WNVIKLLWGSDWDGLFARDKDGELVDALNRTVDGQLQTFAANDGAFNRQHFFGQTPGTRA
Sbjct: 301 WNVIKLLWGSDWDGLFARDKDGELVDALNRTVDGQLQTFAANDGAFNRQHFFGQTPGTRA 360

Query: 361 XTGTMC 366
              T+ 
Sbjct: 361 IGATLT 366


>gi|300310785|ref|YP_003774877.1| pyruvate dehydrogenase E1
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 898

 Score =  406 bits (1043), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/353 (55%), Positives = 251/353 (71%), Gaps = 8/353 (2%)

Query: 14  DLDAQETQEWLQALQSVLAEAGPERARFLLSRLSAAAQQWGVNWRDARNTPYVNTIRPEQ 73
           D D  ETQEWL AL++V+ + GP+RA +L+ R+   A++ G +   + NT YVNTI  +Q
Sbjct: 15  DPDVMETQEWLDALEAVIEKEGPDRAHYLMERMVDLARRRGAHIPFSSNTAYVNTIPADQ 74

Query: 74  EPPFPGGSDAQAIEERIASIMRWNALAMVVRANRAYGELGGHIASFASAADLFEVGFNHF 133
               PG  +    EER+ S MRWNA+AMVV+ANR  G+LGGH++SFAS A++  +GFNHF
Sbjct: 75  GEHCPGNLE---YEERLRSWMRWNAMAMVVKANRVDGDLGGHLSSFASLANMLGIGFNHF 131

Query: 134 FRARDAQFAGDVVYFQPHSAPGIYARAFLEGALSEEDLAYYRREIEAKRVGRQGLSSYPH 193
           + A      GD++Y Q HS+PGIYARAFLEG L+E+ L ++RRE +       GLSSYPH
Sbjct: 132 WHAPTEDHGGDLLYIQGHSSPGIYARAFLEGRLTEDQLIHFRREADG-----HGLSSYPH 186

Query: 194 PWLMPHFWQFPTGSMGIGPINAIYQARFLRYMEHRGLLQDQGRKVWGVFGDGEMDEPESL 253
           P LMP FWQFPT SMG+GP+ AIYQARFL+Y+  RG+ +   RKVW   GDGEMDEPES+
Sbjct: 187 PKLMPEFWQFPTVSMGLGPLMAIYQARFLKYLHARGIAKTDNRKVWAFCGDGEMDEPESM 246

Query: 254 AALSLASREKLDNLIFVVNCNLQRLDGPVRGNGHIVDELETLFAGAGWNVIKLLWGSDWD 313
            A+ +A REKL+NL+ VVNCNLQRLDGPVRGNG I+ ELE+ F GAGWNV+K++WGS WD
Sbjct: 247 GAIGMAGREKLNNLVIVVNCNLQRLDGPVRGNGKIIQELESDFRGAGWNVVKVIWGSGWD 306

Query: 314 GLFARDKDGELVDALNRTVDGQLQTFAANDGAFNRQHFFGQTPGTRAXTGTMC 366
            L A+DKDG L   +  TVDG+ Q + A DGA+ R+HFFG+ P        M 
Sbjct: 307 ELLAKDKDGILQKVMMETVDGEYQNYKAKDGAYVRKHFFGKHPKLLEMVSKMS 359


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,234,881
Number of extensions: 52187
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 3
Length of query: 373
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 286
Effective length of database: 1,207,925
Effective search space: 345466550
Effective search space used: 345466550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)