BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0126.p (159 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313266|ref|YP_003777358.1| AsnC family transcription regul... 318 1e-88 gi|300311006|ref|YP_003775098.1| transcription regulator protein... 121 3e-29 gi|300312130|ref|YP_003776222.1| glutamate uptake transcription ... 105 2e-24 gi|300312490|ref|YP_003776582.1| transcription regulator protein... 104 4e-24 gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p... 100 7e-23 >gi|300313266|ref|YP_003777358.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 318 bits (815), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 158/159 (99%), Positives = 159/159 (100%) Query: 1 MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLETEGIISRYVALADPHL 60 MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLE+EGIISRYVALADPHL Sbjct: 1 MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHL 60 Query: 61 LGLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEH 120 LGLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEH Sbjct: 61 LGLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEH 120 Query: 121 FIVDHLTKIPGIKNIRSSFALKQIKYKTALPTPKIKTRR 159 FIVDHLTKIPGIKNIRSSFALKQIKYKTALPTPKIKTRR Sbjct: 121 FIVDHLTKIPGIKNIRSSFALKQIKYKTALPTPKIKTRR 159 >gi|300311006|ref|YP_003775098.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 121 bits (304), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 61/151 (40%), Positives = 89/151 (58%) Query: 1 MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLETEGIISRYVALADPHL 60 + +D DL +L LQ + I+N L +++LS S RV+RLE +I RY A+ DP + Sbjct: 4 INVDRYDLALLTELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAV 63 Query: 61 LGLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEH 120 +GL V F V L+RQG FE AV EV E + +TG+ DY+LRIV PDL Sbjct: 64 VGLGVTAFTTVTLDRQGETRGELFEKAVETMPEVTECFSVTGEGDYILRIVAPDLAAFSE 123 Query: 121 FIVDHLTKIPGIKNIRSSFALKQIKYKTALP 151 F++ L ++PG+ N++S+ LK++K LP Sbjct: 124 FMMTRLLRLPGVTNVKSNITLKKVKQSHELP 154 >gi|300312130|ref|YP_003776222.1| glutamate uptake transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 105 bits (262), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 90/149 (60%), Gaps = 1/149 (0%) Query: 3 LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLETEGIISRYVALADPHLLG 62 +D TD RIL ILQE+S+ + E+A +NLS +P R++RLE EG+I R V L D L Sbjct: 2 IDRTDRRILEILQEDSTRAVAEIAECVNLSTTPCWRRIQRLEAEGVIKRRVVLLDAEKLN 61 Query: 63 LKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHFI 122 + V V V++ + A L +F V+ EV+EV+ M+G DY+L+++VP++ + + Sbjct: 62 VSVTVLVEIKTRQHSASWLKKFRDVVTCIPEVVEVHRMSGHIDYMLKVMVPNIGAYDS-V 120 Query: 123 VDHLTKIPGIKNIRSSFALKQIKYKTALP 151 L + ++ SSF+++ +K TALP Sbjct: 121 YKRLISAVELDDVSSSFSMETLKSTTALP 149 >gi|300312490|ref|YP_003776582.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 153 Score = 104 bits (259), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 55/145 (37%), Positives = 80/145 (55%) Query: 1 MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLETEGIISRYVALADPHL 60 M LD D RIL LQ++ I N ELA ++ +S + KRL EG + A+ DP Sbjct: 1 MSLDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMEEGYVKEVRAILDPEK 60 Query: 61 LGLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEH 120 LGL V V V V+L+R E+ A+FE AV V E L+ G+ DY +++ V DL Sbjct: 61 LGLPVLVTVGVVLDRSTPESFAEFEKAVRDIAAVQECLLLAGEFDYWIKLRVKDLQAFNR 120 Query: 121 FIVDHLTKIPGIKNIRSSFALKQIK 145 + L ++PG++ +RS F L ++K Sbjct: 121 LHANTLLRLPGVRQLRSFFVLNEVK 145 >gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 100 bits (248), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 89/149 (59%) Query: 3 LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLETEGIISRYVALADPHLLG 62 LD +IL LQ + ISN++LA+R+NLSP+ L RV++L+ G I Y A +P LL Sbjct: 4 LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63 Query: 63 LKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHFI 122 + + VF++V+L+R + A+F+ +V + E+ME +++ G DYL++ V D+ F+ Sbjct: 64 VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123 Query: 123 VDHLTKIPGIKNIRSSFALKQIKYKTALP 151 L ++ G++ + ++++K LP Sbjct: 124 GKSLLQLKGVRETHTYAVMEEVKNTIRLP 152 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 421,165 Number of extensions: 14787 Number of successful extensions: 65 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 62 Number of HSP's successfully gapped: 9 Length of query: 159 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 81 Effective length of database: 1,250,540 Effective search space: 101293740 Effective search space used: 101293740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)