BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0125.p
         (173 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313267|ref|YP_003777359.1| response regulator transcriptio...   274   3e-75
gi|300312037|ref|YP_003776129.1| sensory transduction regulatory...    89   1e-19
gi|300312512|ref|YP_003776604.1| sensory transduction regulatory...    84   6e-18
gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790...    58   4e-10

>gi|300313267|ref|YP_003777359.1| response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 188

 Score =  274 bits (701), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 135/171 (78%), Positives = 151/171 (88%)

Query: 1   MSFPSIIMIDPSQEAAELARFALWRAGLHCAFRACPDLATARRCLLQGRRQGDDIAPSLI 60
           MSFPSIIMIDPS EAAELARFALWRAGLHCAFRAC D+ATARRCLL GRR GD   PSLI
Sbjct: 13  MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLI 72

Query: 61  LLESDMECGEGLQLLRELRASKHLADAPVVVFPSYETEGEREALAAGATEYLPKPVDGEH 120
           LLESDMECG+GL+LLRELRAS HLA+APVVVFPS++TEGEREAL AGAT YLPKP+DGE 
Sbjct: 73  LLESDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGEREALDAGATAYLPKPIDGER 132

Query: 121 YAQCVVEMVERWCDVSEAAAPLSADVMRDALAGLPGHPQRRQEDGSPQGGR 171
           YA+CVVEMVERWCDVSEAAAP+   + R++L GLPGHP+RR++D    GG+
Sbjct: 133 YARCVVEMVERWCDVSEAAAPVQEALTRESLDGLPGHPRRRRDDLVAPGGK 183


>gi|300312037|ref|YP_003776129.1| sensory transduction regulatory
           protein [Herbaspirillum seropedicae SmR1]
          Length = 140

 Score = 89.4 bits (220), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 76/135 (56%), Gaps = 4/135 (2%)

Query: 1   MSFPSIIMIDPSQEAAELARFALWRAGLHCAFRACPDLATARRCLL--QGRRQGDDIAPS 58
           MS PSI+M+DPS E+ ELARF LWR  L CAF    D   A + L   Q R    D+ P 
Sbjct: 1   MSRPSILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADL-PC 59

Query: 59  LILLESDMECGEGLQLLRELRASKHLADAPVVVF-PSYETEGEREALAAGATEYLPKPVD 117
           LILLE  +   EGL+LL  LRA  H    PVV+F  S +      A AAGA +YL KPVD
Sbjct: 60  LILLEPRLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVD 119

Query: 118 GEHYAQCVVEMVERW 132
              + + V + V RW
Sbjct: 120 ARAFMELVSQTVRRW 134


>gi|300312512|ref|YP_003776604.1| sensory transduction regulatory
           protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score = 84.0 bits (206), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 66/128 (51%), Gaps = 1/128 (0%)

Query: 1   MSFPSIIMIDPSQEAAELARFALWRAGLHCAFRACPDLATARRCLLQGRRQGDDIAPSLI 60
           M  P I+MI+ + EA ELARFALWR+  HC  +   +   A   LL   R  D   P LI
Sbjct: 1   MRPPIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARLPDLI 60

Query: 61  LLESDMECGEGLQLLRELRASKHLADAPVVVFPSYETEGER-EALAAGATEYLPKPVDGE 119
           LL+  M    G+  +  ++A +     PVVVFP  +   E  + L AGA+ YL KP    
Sbjct: 61  LLDPGMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAP 120

Query: 120 HYAQCVVE 127
            Y Q VVE
Sbjct: 121 QYMQAVVE 128


>gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790
           [Herbaspirillum seropedicae SmR1]
          Length = 144

 Score = 57.8 bits (138), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 3   FPSIIMIDPSQEAAELARFALWRAGLHCAFRACPDLATARRCLL-QGRRQGDDIAPSLIL 61
            P I++ID   +A E ARFALWR+ L C      D   A   LL Q   Q  D  P+LIL
Sbjct: 7   LPRILIIDADLDAIETARFALWRSHLSCRIEWFDDAELANASLLTQALCQLRD-QPTLIL 65

Query: 62  LE-SDMECGEGLQLLRELRASKHLADAPVVVFPSYETEGEREALAAGATEYLPKPVDGEH 120
           L+  +    EG +LLR L     LA  P+V+F +     +  A       Y  KP     
Sbjct: 66  LDPRNFRGTEGYELLRTLCVYPQLAQIPLVLFTASPISSDFAAEQDNRIWYAAKPARPAD 125

Query: 121 YAQCVVEMVER 131
           Y + V   V++
Sbjct: 126 YMELVTRCVQQ 136


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 598,795
Number of extensions: 25104
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 4
Length of query: 173
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,245,805
Effective search space: 117105670
Effective search space used: 117105670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)