BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0117.p (288 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313272|ref|YP_003777364.1| transcription regulator protein... 507 e-145 gi|300313063|ref|YP_003777155.1| transcription regulator protein... 204 1e-53 gi|300313290|ref|YP_003777382.1| IclR family transcription regul... 200 1e-52 gi|300313062|ref|YP_003777154.1| IclR family transcription regul... 199 2e-52 gi|300310493|ref|YP_003774585.1| transcription regulator protein... 130 1e-31 >gi|300313272|ref|YP_003777364.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 266 Score = 507 bits (1305), Expect = e-145, Method: Compositional matrix adjust. Identities = 256/266 (96%), Positives = 258/266 (96%), Gaps = 1/266 (0%) Query: 24 MQQEHIEEAEEGAD-GPLKRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAAR 82 MQ+E I+E AD GPLKRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAAR Sbjct: 1 MQEERIDEEPGDADEGPLKRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAAR 60 Query: 83 RYLITLTHLGYMRHDNKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCG 142 RYLITLTHLGYMRHDNKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCG Sbjct: 61 RYLITLTHLGYMRHDNKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCG 120 Query: 143 VLDHDQLVCVAAVSAGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEA 202 VLDHDQLVCVAAVSAGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEA Sbjct: 121 VLDHDQLVCVAAVSAGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEA 180 Query: 203 ITAHTITDVERLGLEIARARAQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAA 262 ITAHTITDVERLGLEIARAR QGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHA Sbjct: 181 ITAHTITDVERLGLEIARARVQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAG 240 Query: 263 RMKLEDMVERCLPAMLKIQVELGALL 288 RMKLEDMVERCLPAMLKIQVELGALL Sbjct: 241 RMKLEDMVERCLPAMLKIQVELGALL 266 >gi|300313063|ref|YP_003777155.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 204 bits (518), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 114/260 (43%), Positives = 162/260 (62%), Gaps = 3/260 (1%) Query: 18 STGQGNMQQEHIEEAEEGADGPLKRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLT 77 G + +E E E G +RD +AGLEKGL ++EAFD + R+T A+VA TGL+ Sbjct: 6 KNGPADDSREVCEPTEGGLS---RRDWIAGLEKGLLILEAFDFDNQRMTSAQVAARTGLS 62 Query: 78 RAAARRYLITLTHLGYMRHDNKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGE 137 R AARRYL+TL HLGY+ + KTF+LTP VL++G SY SA LPRI+QP L ++ GE Sbjct: 63 RTAARRYLLTLEHLGYLHSEGKTFALTPRVLKVGWSYFDSAPLPRILQPFLQQITGQTGE 122 Query: 138 AASCGVLDHDQLVCVAAVSAGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQLDAILAR 197 A VLD LV +A A ++++T G RVPA + G ++L+ LP Q+ LA Sbjct: 123 AVYASVLDGWDLVFIARNGATRVMTTGFVLGARVPAQLASPGIVMLSALPEQQVRDWLAT 182 Query: 198 AQPEAITAHTITDVERLGLEIARARAQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNI 257 T HTITD ++L IA+AR GYA+V+Q+L+ G+R +AVP++N +V+ A+++ Sbjct: 183 CAMTPFTPHTITDPDQLYALIAQARQLGYAVVEQQLQTGVRGIAVPLKNRHAKVIGALSL 242 Query: 258 SVHAARMKLEDMVERCLPAM 277 S+ A E + R LPA+ Sbjct: 243 SLPMAAEAREQTLARILPAL 262 >gi|300313290|ref|YP_003777382.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 200 bits (508), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 110/246 (44%), Positives = 152/246 (61%) Query: 43 DLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMRHDNKTFS 102 + L +GL VI AF R LTIA+++Q TG+ RAA RR L TL LGY D FS Sbjct: 14 SFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADSDVNNFS 73 Query: 103 LTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSAGQLVS 162 L P +L LG SYL S L QP L ++ +LGE+ S VLD +++ VA +A +++S Sbjct: 74 LRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVARSAASRVMS 133 Query: 163 TTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEAITAHTITDVERLGLEIARAR 222 L G+R+PAYCT+ GR +LA+LP QL A + + A+T T+ +RL +A R Sbjct: 134 VALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRLRDILAGVR 193 Query: 223 AQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAARMKLEDMVERCLPAMLKIQV 282 A GYA++D+ELE+GLR++AVPVR G V+AA+N+ AAR+ + M E LP +L+ Sbjct: 194 ANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEEEILPVLLRGAQ 253 Query: 283 ELGALL 288 EL LL Sbjct: 254 ELSVLL 259 >gi|300313062|ref|YP_003777154.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 199 bits (506), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 105/237 (44%), Positives = 146/237 (61%) Query: 41 KRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMRHDNKT 100 KRDL+ GL KG VI AFD + +L+ +EVA+ GLTR+AARRYL+TL H G D K Sbjct: 13 KRDLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMAASDGKK 72 Query: 101 FSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSAGQL 160 F L P +L LGQSYL SAR+PR V P L RL L E+ + +LD D++V V V+A QL Sbjct: 73 FWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAAQL 132 Query: 161 VSTTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEAITAHTITDVERLGLEIAR 220 V+ +PGTR+PAY T GR+LL A++ A L R T +TD L EI Sbjct: 133 VNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAALFQEILT 192 Query: 221 ARAQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAARMKLEDMVERCLPAM 277 R QGY + + + E+G+R +A+ V+N G V+ A++++ + A E+ + R +PA+ Sbjct: 193 MRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREEAIARGVPAL 249 >gi|300310493|ref|YP_003774585.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 133/235 (56%), Gaps = 2/235 (0%) Query: 47 GLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMRHDNKT--FSLT 104 LEKGL V+ AF+ + +T+ +VA TG+++++A+R + TL LGY+ KT + LT Sbjct: 16 SLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYICKHPKTRRYQLT 75 Query: 105 PMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSAGQLVSTT 164 P V+ +G +YL + L + P L LA GE + ++V VA A + + Sbjct: 76 PKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEMVYVARFVASKFIPIH 135 Query: 165 LQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEAITAHTITDVERLGLEIARARAQ 224 + G+R+P YCTA+GR L+ L P + AIL ++ T HT TDVE + +A +R + Sbjct: 136 MPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVEDIMQLLAASRER 195 Query: 225 GYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAARMKLEDMVERCLPAMLK 279 G+A +EL LG ++A PV N + VA++++ +R +E+ ++ P +L+ Sbjct: 196 GFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEAEKKLGPLVLE 250 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 887,016 Number of extensions: 37092 Number of successful extensions: 156 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 7 Length of query: 288 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 204 Effective length of database: 1,222,130 Effective search space: 249314520 Effective search space used: 249314520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)