BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0114.p
         (454 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313275|ref|YP_003777367.1| 3-carboxy-cis,cis-muconate cycl...   791   0.0  

>gi|300313275|ref|YP_003777367.1| 3-carboxy-cis,cis-muconate
           cycloisomerase [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/452 (94%), Positives = 438/452 (96%)

Query: 1   MSVSIFDSFLTTSDMIAVFDDQAVVQAMLRFEQVLAEAEAAEGIIPEAAARAIASVCRAP 60
           MSVSIFDSFLTTS+MIAVFDDQAVVQAMLRFEQVLAEA+AAEG+IP+AAARAIASVCRAP
Sbjct: 1   MSVSIFDSFLTTSEMIAVFDDQAVVQAMLRFEQVLAEAQAAEGVIPDAAARAIASVCRAP 60

Query: 61  LYDINALIVAGRRAGALAIPLVKELQRTVALYSEEAATHVHWGSTSQDVLDTAMVLVTRE 120
           LYDI ALIVAGRRAGALAIPLVKELQRTVALYSEEAATHVHWGSTSQDVLDTAMVLVTRE
Sbjct: 61  LYDIPALIVAGRRAGALAIPLVKELQRTVALYSEEAATHVHWGSTSQDVLDTAMVLVTRE 120

Query: 121 ALRLVDGELDQLAHRLLDLSQSHLDTPVLARTLMQPAQVTSLGLKFCNWAAPLLRSRAQL 180
           ALRLV+GEL+QL+ RLLDL+QSHLDTPVLARTLMQPAQVTSLGLKFCNWAAPLLRSRAQL
Sbjct: 121 ALRLVEGELEQLSRRLLDLAQSHLDTPVLARTLMQPAQVTSLGLKFCNWAAPLLRSRAQL 180

Query: 181 QALAERALQLQLGGAVGTLAVLGEKGPAVAARMAAALGLKTPDAAWHTQRDEWIRLGTEM 240
           QALAERALQLQLGGAVGTL VLGEKGPAVAARMAAAL LKTP+AAWHTQRD+WIRLG EM
Sbjct: 181 QALAERALQLQLGGAVGTLTVLGEKGPAVAARMAAALELKTPEAAWHTQRDQWIRLGAEM 240

Query: 241 AVLAGSLGKIATDLSLMAQGEIAELAEPSGNGRGGSSAMPHKRNPVSSMIALAAATRAPQ 300
           AVLAGSLGKIATDLSLMAQGEIAELAEPSGNGRGGSSAMPHKRNPVSSMIALAAA RAPQ
Sbjct: 241 AVLAGSLGKIATDLSLMAQGEIAELAEPSGNGRGGSSAMPHKRNPVSSMIALAAAARAPQ 300

Query: 301 QAAALLAAMSQQHERGLGNWQAELAEWPGLFLGVHGALRALNDAFAALVIDEARMLRNID 360
           QAAALLAAMSQQHERGLGNWQAELAEWP LFLGVHGALRALNDAFA LVID  RMLRNID
Sbjct: 301 QAAALLAAMSQQHERGLGNWQAELAEWPALFLGVHGALRALNDAFAGLVIDAPRMLRNID 360

Query: 361 ALQGLVFAESASIALAGVIGRPRAHSLLEQLTRKAVADGAHLVDVLVDAVQADAQLSKEI 420
           ALQGLVFAESASIALAGVIGRPRAHSLLEQLTRKAVADGA LVDVLVDAVQADAQL KEI
Sbjct: 361 ALQGLVFAESASIALAGVIGRPRAHSLLEQLTRKAVADGAQLVDVLVDAVQADAQLRKEI 420

Query: 421 DLAMLRGLFDPVQATRPARRVAEGQLEHLRAL 452
           DL MLRGLFDPVQATRPARR+AEGQLEHLR L
Sbjct: 421 DLPMLRGLFDPVQATRPARRIAEGQLEHLRTL 452


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,035,558
Number of extensions: 33955
Number of successful extensions: 181
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 2
Length of query: 454
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 366
Effective length of database: 1,203,190
Effective search space: 440367540
Effective search space used: 440367540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)