BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0110.p
         (349 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313279|ref|YP_003777371.1| vanillate O-demethylase oxygena...   692   0.0  
gi|300309801|ref|YP_003773893.1| phenylpropionate dioxygenase [H...    77   1e-15

>gi|300313279|ref|YP_003777371.1| vanillate O-demethylase oxygenase
           subunit oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/349 (94%), Positives = 341/349 (97%)

Query: 1   MFPKNAWYVACTPDEIESKPLGRQICGEKIVFYRGAEGKVAAVEDFCPHRGAPLSLGFVR 60
           MFPKNAWYVACTPDEI+SKPLGRQICGEKIVFYRGA GKVAAVEDFCPHRGAPLSLGFVR
Sbjct: 1   MFPKNAWYVACTPDEIDSKPLGRQICGEKIVFYRGAGGKVAAVEDFCPHRGAPLSLGFVR 60

Query: 61  EGQLVCGYHGLEMGCDGQTRSMPGQRVRGFPCIRSFPVVERYGFVWVWPGDKEQADPAQI 120
           EGQLVCGYHGLEMGCDG+  SMPGQRVRGFPCIRS+PV ERYGF+WVWPGDKEQADPAQI
Sbjct: 61  EGQLVCGYHGLEMGCDGKAISMPGQRVRGFPCIRSYPVEERYGFIWVWPGDKEQADPAQI 120

Query: 121 HHLEWAENPEWAYGGGLYHINCDYRLMIDNLMDLTHETYVHASSIGQKEIDEAPVNTRVE 180
           HHLEWA+NPEWAYGGGLYHINCDYRLMIDNLMDLTHETYVHASSIGQKEIDEAPVNTRVE
Sbjct: 121 HHLEWADNPEWAYGGGLYHINCDYRLMIDNLMDLTHETYVHASSIGQKEIDEAPVNTRVE 180

Query: 181 GEQVITSRFMENIMPPPFWRMALRGNGLADEVPVDRWQICRFSPPSHVMIEVGVAHAGKG 240
           GEQVITSRFM+NIMPPPFWRMALRGNGLAD+VPVDRWQICRFSPPSHVMIEVGVAHAG G
Sbjct: 181 GEQVITSRFMDNIMPPPFWRMALRGNGLADDVPVDRWQICRFSPPSHVMIEVGVAHAGHG 240

Query: 241 GYEAGPEHKASSIVVDFITPETETSHWYFWGMARHFRPEDKELTNTIREGQGKIFGEDRE 300
           GYEAGPEHKASSIVVDFITPETETSHWYFWGMARHFRP+DKELT+TIREGQGKIFGEDRE
Sbjct: 241 GYEAGPEHKASSIVVDFITPETETSHWYFWGMARHFRPQDKELTDTIREGQGKIFGEDRE 300

Query: 301 MLELQQANLLKYPERRLLALNIDAGGVQSRKVLDKWLAREAESGKAAAA 349
           MLELQQANLL++PERRLLALNIDAGGVQSRKVLDKWLAREA  G+ AAA
Sbjct: 301 MLELQQANLLRHPERRLLALNIDAGGVQSRKVLDKWLAREAGDGQPAAA 349


>gi|300309801|ref|YP_003773893.1| phenylpropionate dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 22/174 (12%)

Query: 4   KNAWYVACTPDEIESKPLGRQICGEKIVFYRGAEGKVAAVEDFCPHRGAPLSLGFVREGQ 63
           +  WY      ++   P    + GEK+V +   +G  AA++D C HR A LS GFV  G 
Sbjct: 10  RRFWYALMPIAQLRQGPQPFTLLGEKLVVWLKEDGAPAALQDRCCHRTARLSKGFVENGN 69

Query: 64  LVCGYHGLEMGCDGQTRSMPGQRVRGFP---CIRSFPVVERYGFVWV--------WPGDK 112
           +VCGYHG     +G    +P       P   C++S+   ERYG+VWV         P   
Sbjct: 70  IVCGYHGWTFNGEGACVRVPQNADGSVPAGACVKSYFCKERYGYVWVALEEPLRDIPEFP 129

Query: 113 EQADPAQIHHLEWAENPEWAYGGGLYHINCDYRLMIDNLMDLTHETYVHASSIG 166
           E+  P      ++ E  E                M++N  D +H +YVH ++ G
Sbjct: 130 EEGAPGYRRIFQFYERWE-----------TSALRMMENSFDNSHFSYVHRATFG 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,221,093
Number of extensions: 54828
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 2
Length of query: 349
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 263
Effective length of database: 1,212,660
Effective search space: 318929580
Effective search space used: 318929580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)