BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0109.p
         (169 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313280|ref|YP_003777372.1| MarR family transcription regul...   286   8e-79
gi|300313304|ref|YP_003777396.1| MarR family transcription regul...    56   1e-09

>gi|300313280|ref|YP_003777372.1| MarR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 169

 Score =  286 bits (731), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 143/168 (85%), Positives = 153/168 (91%), Gaps = 2/168 (1%)

Query: 4   TTPPK--DESQLIDLYEHPGHLLRRAQQISVSIFHDETGGIITPVQYAILRMLSNHPGID 61
           + PP   DES L DLYEHPGHLLRRAQQISVSIFHDE GG++TPVQYAILRMLSNHPGID
Sbjct: 2   SRPPSHSDESPLTDLYEHPGHLLRRAQQISVSIFHDEIGGVVTPVQYAILRMLSNHPGID 61

Query: 62  QVSLSGLVAIDTSTGATVCARLEEKGLLVREVIPHNRRQRALRITQAGEALLEELIPGLQ 121
           QV+L+GLVAIDTSTGATVCARLEEKGLL+REVIPHNRRQRALR T AGEALLEEL PGLQ
Sbjct: 62  QVTLAGLVAIDTSTGATVCARLEEKGLLLREVIPHNRRQRALRTTAAGEALLEELTPGLQ 121

Query: 122 RLRKRILAPLDEAEQQQFMLLLDKLVHENNPQSRAPLARLRDQDCQED 169
           RLRKRILAPL+EAEQ+QFM LLDKLV  NNPQSRAPLARL+D+ C ED
Sbjct: 122 RLRKRILAPLEEAEQRQFMALLDKLVQLNNPQSRAPLARLQDERCDED 169


>gi|300313304|ref|YP_003777396.1| MarR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score = 56.2 bits (134), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 4/142 (2%)

Query: 7   PKDESQLIDLYEHPGHLLRRAQQISVSIFHDETGGI-ITPVQYAILRMLSNHPGIDQVSL 65
           P D+  L+ L    G+  RRA    + +F        + PV + +L +L  +P I+Q  L
Sbjct: 20  PLDQQLLLSLV---GYNCRRAYITIMPLFEKRMAKFELRPVDFTVLSLLKANPDINQKRL 76

Query: 66  SGLVAIDTSTGATVCARLEEKGLLVREVIPHNRRQRALRITQAGEALLEELIPGLQRLRK 125
           S  + +     AT+  RLE++GL++R+  P +RR + L +T AG  +  +       L  
Sbjct: 77  SKAINVSPPNLATLLDRLEQRGLVLRQRNPQDRRSQVLALTTAGLRMCTKAEQTAIELEL 136

Query: 126 RILAPLDEAEQQQFMLLLDKLV 147
           +    L +AE+ Q + LL K+ 
Sbjct: 137 KATEMLSDAERAQLIGLLQKMF 158


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 535,508
Number of extensions: 20987
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 2
Length of query: 169
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,245,805
Effective search space: 112122450
Effective search space used: 112122450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)