BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0107.p (144 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC t... 267 3e-73 gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPa... 134 4e-33 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 127 3e-31 gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 120 3e-29 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 117 4e-28 >gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 267 bits (682), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 129/140 (92%), Positives = 134/140 (95%) Query: 1 VSAGYGDSIVLEEVSFSMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGSIHWRGSNIA 60 VSAGYG SIVLE+VSF+MQEGESLALLGRNGVGKTSLLITLMGLTRLHGGSI WRG +IA Sbjct: 10 VSAGYGQSIVLEDVSFTMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGSIRWRGGDIA 69 Query: 61 RVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKWNLQKIYSIFPRLHERRHNMG 120 RV THKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKW+LQKIY IFPRLHERRHNMG Sbjct: 70 RVATHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGKWDLQKIYQIFPRLHERRHNMG 129 Query: 121 NQLSGGEQQMLAIARALMXN 140 NQLSGGEQQMLAIARALM + Sbjct: 130 NQLSGGEQQMLAIARALMVS 149 >gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 134 bits (336), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 5/145 (3%) Query: 1 VSAGYGDSIVLEEVSFSMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGSIHWRGSNIA 60 ++ GYG S VL + ++EGE + LLGRNG+GKT+ L T++GL R GG + +RG I Sbjct: 10 LTGGYGASQVLFGIDMQVREGEVVTLLGRNGMGKTTTLRTILGLNRPTGGVVRFRGEAIH 69 Query: 61 RVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTVVE-----RGGKWNLQKIYSIFPRLHER 115 A G+ VP+ R +F +LSVEE+L+ R W L+KIY FPRL ER Sbjct: 70 SASADAIARRGMAIVPEGRQIFKNLSVEENLSAFAARRNGRDNPWTLEKIYQQFPRLKER 129 Query: 116 RHNMGNQLSGGEQQMLAIARALMXN 140 RHN G QLSGGEQQMLAI RALM N Sbjct: 130 RHNGGGQLSGGEQQMLAIGRALMTN 154 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 127 bits (320), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 69/140 (49%), Positives = 94/140 (67%), Gaps = 1/140 (0%) Query: 5 YGDSIVLEEVSFSMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGSIHWRGSNIARVPT 64 YG S +L+ VS + GE + LLGRNG GKT+ L +++G+ G + + G I+ +P+ Sbjct: 12 YGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVLFEGQLISGLPS 71 Query: 65 HKRAHAGLGWVPQERFMFPSLSVEEHLTVVERG-GKWNLQKIYSIFPRLHERRHNMGNQL 123 +K A G+ VP+ R +F L+VEE+LT+ R W L++IY+IFPRL ERR N G QL Sbjct: 72 YKIAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWGLEEIYAIFPRLKERRKNGGGQL 131 Query: 124 SGGEQQMLAIARALMXNLRA 143 SGGEQQMLAIARALM + R Sbjct: 132 SGGEQQMLAIARALMTHPRV 151 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 120 bits (302), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 64/137 (46%), Positives = 91/137 (66%), Gaps = 4/137 (2%) Query: 5 YGDSIVLEEVSFSMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGSIHWRGSNIARVPT 64 YG+S +L V+ ++ +GE + LLGRNG G+T+ L ++MGL GSI G + T Sbjct: 21 YGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIKINGQETINLAT 80 Query: 65 HKRAHAGLGWVPQERFMFPSLSVEEHLTV---VERGGK-WNLQKIYSIFPRLHERRHNMG 120 HK AH G+G+ P+ER +F SLS EE+L + V + K ++ +IY +FP L ERR++ G Sbjct: 81 HKIAHHGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSIDEIYEMFPNLKERRNSQG 140 Query: 121 NQLSGGEQQMLAIARAL 137 +LSGGEQQMLA+AR L Sbjct: 141 TRLSGGEQQMLAVARIL 157 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 117 bits (293), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 63/145 (43%), Positives = 92/145 (63%), Gaps = 6/145 (4%) Query: 1 VSAGYGDSIVLEEVSFSMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGSIHWRGSNIA 60 + AGYG S VL V ++Q GE +++LGRNG G+++LL LMGL G + G +I+ Sbjct: 13 LQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLPSR-GDCRFEGRDIS 71 Query: 61 RVPTHKRAHAGLGWVPQERFMFPSLSVEEHLTVVERGGK-----WNLQKIYSIFPRLHER 115 +PTH A G+G+VP+ R +FP+LSV ++L + + G W I+++FP L++R Sbjct: 72 GLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRGWCEDDIHALFPALYKR 131 Query: 116 RHNMGNQLSGGEQQMLAIARALMXN 140 R LSGGEQQMLA+ RAL+ N Sbjct: 132 RQVAAAALSGGEQQMLALGRALLGN 156 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 473,229 Number of extensions: 19549 Number of successful extensions: 324 Number of sequences better than 1.0e-08: 53 Number of HSP's gapped: 294 Number of HSP's successfully gapped: 53 Length of query: 144 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 67 Effective length of database: 1,255,275 Effective search space: 84103425 Effective search space used: 84103425 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)