BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0106.p (255 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC t... 482 e-137 gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPa... 175 4e-45 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 173 1e-44 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 172 2e-44 gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC t... 172 3e-44 >gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 482 bits (1240), Expect = e-137, Method: Compositional matrix adjust. Identities = 238/252 (94%), Positives = 244/252 (96%) Query: 4 HPADTTLRTEGLSKRWGSFVANSDISLTFTPGARHALIGPNGAGKTTFINLLTGGFAPSG 63 H ADTTLRTEGLSKRWGSFVANSDISLTF PGARHALIGPNGAGKTTFINLLTGGFAPS Sbjct: 6 HQADTTLRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGGFAPSS 65 Query: 64 GKVWFGGEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVILAIQERRGLQYKWYQTV 123 G+VWFGGEDITAL QH RVKRGMTRTFQINTLFAGLTVLESV+LAIQERRGLQYKWYQTV Sbjct: 66 GRVWFGGEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTV 125 Query: 124 ASQTDVVNEAMALLESLKLGQEANSITRSLAYGKQRLVEIALALATQPKVLLLDEPAAGI 183 ASQT+VV+EAMALL SLKL QEANS+TR+LAYGKQRLVEIALALATQPKVLLLDEPAAGI Sbjct: 126 ASQTEVVDEAMALLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDEPAAGI 185 Query: 184 PSAESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADQR 243 PSAESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAAD R Sbjct: 186 PSAESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADPR 245 Query: 244 VKEVYLGEAEHA 255 VKEVYLGEAEHA Sbjct: 246 VKEVYLGEAEHA 257 >gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 175 bits (443), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 98/253 (38%), Positives = 148/253 (58%) Query: 1 MSPHPADTTLRTEGLSKRWGSFVANSDISLTFTPGARHALIGPNGAGKTTFINLLTGGFA 60 M PA L +GL K +G A D+ L G HA+IGPNGAGKTT ++LL+G A Sbjct: 1 MVREPAALALVVKGLKKNYGGLAATRDVDLEIAAGQVHAIIGPNGAGKTTLLSLLSGALA 60 Query: 61 PSGGKVWFGGEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVILAIQERRGLQYKWY 120 G++ G+ + A+ RV G+ R+FQI ++F L+VLE++ +A+Q + Y ++ Sbjct: 61 ADAGEIHLFGQPMHGHAEQARVAAGLVRSFQITSVFDELSVLENLQVAVQRGQHRSYGFF 120 Query: 121 QTVASQTDVVNEAMALLESLKLGQEANSITRSLAYGKQRLVEIALALATQPKVLLLDEPA 180 A AM + + L + + ++ L++G +R +++ LA+A P+VLL+DEP Sbjct: 121 HASAGDRAAREAAMTVARRVGLEKVVHQLSSQLSHGARRRLDVGLAIACSPRVLLMDEPM 180 Query: 181 AGIPSAESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAA 240 AG+ ES ++ +I L E+T+V +EHDM VF A+R+TVLV G VL G+ EI A Sbjct: 181 AGMGHEESGDMIALIQSLKEELTVVLVEHDMEAVFALADRMTVLVQGAVLATGSVDEIRA 240 Query: 241 DQRVKEVYLGEAE 253 + VK YLGE E Sbjct: 241 NAEVKLAYLGEEE 253 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 173 bits (439), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 146/244 (59%) Query: 7 DTTLRTEGLSKRWGSFVANSDISLTFTPGARHALIGPNGAGKTTFINLLTGGFAPSGGKV 66 D L T L+K + F A S ++L G HALIGPNGAGKTT NLLT P+ G++ Sbjct: 3 DVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQI 62 Query: 67 WFGGEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVILAIQERRGLQYKWYQTVASQ 126 F G DIT A + ++G+ R+FQI+ +F ++VLE+V + +Q + G + +++ S Sbjct: 63 LFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGESL 122 Query: 127 TDVVNEAMALLESLKLGQEANSITRSLAYGKQRLVEIALALATQPKVLLLDEPAAGIPSA 186 + AM LLE + L A++ T L YG++R +EIA LA +P+++LLDEP G+ Sbjct: 123 KQLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHE 182 Query: 187 ESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADQRVKE 246 + + +I ++ TI+ +EH+M ++ +RI+VL G +L EG+ E++ + +V E Sbjct: 183 DVDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQVME 242 Query: 247 VYLG 250 Y+G Sbjct: 243 AYMG 246 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 172 bits (437), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 101/252 (40%), Positives = 144/252 (57%), Gaps = 10/252 (3%) Query: 10 LRTEGLSKRWGSFVANSDISLTFTPGARHALIGPNGAGKTTFINLLTGGFAPSGGKVWFG 69 L+ +SK +G ++ G LIGPNGAGKTT NL+TG S G + F Sbjct: 3 LQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRFN 62 Query: 70 GEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVILAIQERRGLQYKWYQTV------ 123 +DI A+A H+ +RG+ RTFQ +F +T+LE+V++ + + L Y + Sbjct: 63 DDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDH--LNYGVASMLLNLGGF 120 Query: 124 -ASQTDVVNEAMALLESLKLGQEANSITRSLAYGKQRLVEIALALATQPKVLLLDEPAAG 182 ++ + A+ LL ++L +A+ + SL+YG+QR +E A ALAT+PK+LLLDEP AG Sbjct: 121 RNAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAG 180 Query: 183 IPSAESRELF-EVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAAD 241 + AE EL E++ R TI IEHDM V ERI VL GK++ EGTP +I + Sbjct: 181 MNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 Query: 242 QRVKEVYLGEAE 253 Q V E YLG+ E Sbjct: 241 QEVIEAYLGKEE 252 >gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 172 bits (436), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 152/245 (62%), Gaps = 7/245 (2%) Query: 10 LRTEGLSKRWGSFVANSDISLTFTPGARHALIGPNGAGKTTFINLLTGGFAPSGGKVWFG 69 L+ ++KR+G F A + I+L G H++IGPNGAGKTT + LTG + G + Sbjct: 6 LQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILVE 65 Query: 70 GEDITALAQHERVKRGMTRTFQINTLFAGLTVLESVILAIQERRGLQ----YKWYQTVAS 125 GE++ L + RV++G+ R+FQ+ +LF L+V E++ LA Q R L +K + ++ Sbjct: 66 GEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRAEQFSA 125 Query: 126 QTDVVNEAMALLESLKLGQEANSITRSLAYGKQRLVEIALALATQPKVLLLDEPAAGIPS 185 + +E +A L + Q A + L++G+QR +E+ +A+A +PKV+ LDEP +G+ Sbjct: 126 ACALADELLARLSLQAVAQRACA---ELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGMGI 182 Query: 186 AESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADQRVK 245 + E+ ++I L R+ T+V IEH+M +V ++RITV+ G++L +G PAEI +D+RV+ Sbjct: 183 DDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDERVR 242 Query: 246 EVYLG 250 YLG Sbjct: 243 RAYLG 247 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 801,297 Number of extensions: 34296 Number of successful extensions: 526 Number of sequences better than 1.0e-08: 126 Number of HSP's gapped: 325 Number of HSP's successfully gapped: 131 Length of query: 255 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 172 Effective length of database: 1,226,865 Effective search space: 211020780 Effective search space used: 211020780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)