BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0105.p (335 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313285|ref|YP_003777377.1| branched-chain amino acid ABC t... 547 e-157 gi|300314069|ref|YP_003778161.1| amino acid ABC transporter perm... 120 2e-28 gi|300312953|ref|YP_003777045.1| amino acid ABC transporter perm... 118 5e-28 gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC t... 111 9e-26 gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC t... 101 8e-23 >gi|300313285|ref|YP_003777377.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 338 Score = 547 bits (1410), Expect = e-157, Method: Compositional matrix adjust. Identities = 317/331 (95%), Positives = 326/331 (98%) Query: 5 STSTRAAAKPVLRLPNDRWTPLEILFWLLPVAAYFLFPDYLVLISQIMIVGLFAVSLDLI 64 +T +A +PVLRLPNDRWT LEILFWLLPVAAYF+FPDYLVLISQIMIVGLFAVSLDLI Sbjct: 8 NTPNPSAMQPVLRLPNDRWTLLEILFWLLPVAAYFIFPDYLVLISQIMIVGLFAVSLDLI 67 Query: 65 LGYAGIVSLGHAAFFGLGAYTAGLLAVHGWGEPITGLVLAAIVAAVAGFLVSFLVVRGAD 124 LGYAGIVSLGHAAFFGLGAYTAGLLAVHGWGEPITGL+LAA+VAA+AGFLVSFLVVRGAD Sbjct: 68 LGYAGIVSLGHAAFFGLGAYTAGLLAVHGWGEPITGLLLAAVVAAIAGFLVSFLVVRGAD 127 Query: 125 LTRLMVTLGIGLMLFEAANKAAFITGGVDGLSGMVMGKIFGVFEFDLNGRVAYGYSFAVL 184 LTRLMVTLGIGLMLFEAANKAAFITGGVDGLSGMVMGKIFGVFEFDLNGRVAYGYSFAVL Sbjct: 128 LTRLMVTLGIGLMLFEAANKAAFITGGVDGLSGMVMGKIFGVFEFDLNGRVAYGYSFAVL 187 Query: 185 LLLFVVLRRMVNSPFGLGLRGIREGGRRMPAIGADVNRRLVVIFTVAAAVAGVAGALLAQ 244 LLLFV+LRR+VNSPFGLGLRGIREGGRRMPAIGADVNRRLVVIFTVAAAVAGVAGALLAQ Sbjct: 188 LLLFVILRRLVNSPFGLGLRGIREGGRRMPAIGADVNRRLVVIFTVAAAVAGVAGALLAQ 247 Query: 245 TTQFVGLDVLGFPRSAELLIILVLGGTGRLYGGLVGALVYMLAQDYLSGLNPAYWQFWIG 304 TTQFVGLDVLGFPRSAELLIILVLGGTGRLYGGLVGALVYMLAQDYLSGLNPAYWQFWIG Sbjct: 248 TTQFVGLDVLGFPRSAELLIILVLGGTGRLYGGLVGALVYMLAQDYLSGLNPAYWQFWIG 307 Query: 305 LLLIVIVLFARGGLLGGLAVLRDKFFKGGRA 335 LLLIVIVLFARGGLLGGLAVLRDKFFKGGRA Sbjct: 308 LLLIVIVLFARGGLLGGLAVLRDKFFKGGRA 338 >gi|300314069|ref|YP_003778161.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 326 Score = 120 bits (300), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 159/304 (52%), Gaps = 19/304 (6%) Query: 41 FPDYLVLISQIMIVGLFAVSLDLILGYAGIVSLGHAAFFGLGAYTAGLLAVHGWGEPIT- 99 F Y V + +++ LFA + +L++GY G++S GHAAF G Y G A+ WG P Sbjct: 19 FGIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGYMCG-QALKVWGLPTEL 77 Query: 100 GLVLAAIVAAVAGFLVSFLVVRGADLTRLMVTLGIGLMLFEAANKAAFITGGVDGLSGMV 159 GL++ + A+ G ++ L +R + M+TL + MLF A +A F TGG DGL G+ Sbjct: 78 GLIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPF-TGGEDGLQGVP 136 Query: 160 MGKIFGVFEFDLNGRVAYGYSFAVLLLLFVVLRRMVNSPFGLGLRGIREGGRRMPAIGAD 219 GK+ G + + + Y A+ + F ++ R ++SPFG L+ I+E R ++G D Sbjct: 137 RGKLLGFLNLESDMTLYY-VVLAIAVAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYD 195 Query: 220 VNRRLVVIFTVAAAVAGVAGALLAQTTQFVGLDVLGFPRSAELLIILVLGGTGRLYGGLV 279 V R ++ F ++A ++G+AGA F L + + S ++++ ++GG G + G +V Sbjct: 196 VARYKLLAFVLSAGLSGLAGATKTLVLGFETLTDVHWSMSGLVVLMTLVGGLGTILGPIV 255 Query: 280 GALVYMLAQD-------YLSGLNPAYW--------QFWIGLLLIVIVLFARGGLLGGLAV 324 GA++ ++ ++ +L+ + W G + IV VL R G++G + Sbjct: 256 GAVIIIMLENKLGDIGAWLASVTHIDWFNTLGDSVTIVTGFIFIVCVLAFRKGIVGEILA 315 Query: 325 LRDK 328 L K Sbjct: 316 LTRK 319 >gi|300312953|ref|YP_003777045.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 317 Score = 118 bits (296), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 100/276 (36%), Positives = 159/276 (57%), Gaps = 5/276 (1%) Query: 44 YLVLISQIMIVGLFAVSLDLILGYAGIVSLGHAAFFGLGAYTAGLLAVHGWGEPITGLVL 103 Y+ ++++I+I + A SL+ ILGY G+VS GHA FFGLGAY + + HG +L Sbjct: 28 YIGVLTRILIFAMVAASLNFILGYGGMVSFGHAVFFGLGAYVTAIASFHGVTSAWLIWLL 87 Query: 104 AAIVAAVAGFLVSFLVVRGADLTRLMVTLGIGLMLFEAANKAAFITGGVDGLSGMVMGKI 163 AA+V A+ G ++ + +R + +M+T+ + LF GG DGL V + Sbjct: 88 AALVTALVGLVIGVIALRTRAVYFIMITMALA-QLFYYFFVGFRYYGGDDGLQ--VTARP 144 Query: 164 FGVFEFDLNGRVA-YGYSFAVLLLLFVVLRRMVNSPFGLGLRGIREGGRRMPAIGADVNR 222 F D++G A Y A L F++L+R++ S FGL L IR+ RR AIG R Sbjct: 145 LLGFGLDMSGDNAFYWVVLAWLAASFILLQRLLASRFGLALNAIRQNERRAQAIGYPALR 204 Query: 223 RLVVIFTVAAAVAGVAGALLAQTTQFVGLDVLGFPRSAELLIILVLGGTGRLYGGLVGAL 282 + F +AA +AG+AG+L+ + F +L + +S LL+++ LGG G YGGL+GA Sbjct: 205 YKLAAFVIAAVIAGIAGSLIGMSNLFASPKLLHWSQSGILLVMVALGGVGYFYGGLLGAA 264 Query: 283 VYMLAQDYLSGLNPAYWQFWIGLLLIVIVLFARGGL 318 ++L ++ LS + YWQ ++GL+L+++V+ A G+ Sbjct: 265 AFLLLEEVLS-THFEYWQIYVGLILLLVVMVAPRGV 299 >gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 628 Score = 111 bits (277), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 139/263 (52%), Gaps = 13/263 (4%) Query: 41 FPDYLVLISQIMIVGLFAVSLDLILGYAGIVSLGHAAFFGLGAYTAGLLAVH-GWGEPIT 99 FP VL+ +I++ LFA SL ++G G+VS GHAA+FGLGAY A L+ + W P+ Sbjct: 344 FPYLPVLMVEILVAVLFAASLHFLMGPGGMVSFGHAAYFGLGAYAAALVTLRLQWPMPLA 403 Query: 100 GLVLAAIVAAVAGFLVSFLVVRGADLTRLMVTLGIGLMLFEAANKAAFITGGVDGLSGMV 159 ++ A A +A L + VR + + M+TL +++ A + +TGG +GL G+ Sbjct: 404 -MLAGAGTAMLAALLFGWFCVRLSGVYLAMLTLAFAQIVWAAIYQWDDLTGGSNGLVGLR 462 Query: 160 MGKIFGVFEFDLNGRVAYGYSFAVLL--LLFVVLRRMVNSPFGLGLRGIREGGRRMPAIG 217 L +AY Y A+L L +LRR++++PFGL LR R+ R A+G Sbjct: 463 TAA-------ALASPLAY-YYLALLCSALGVYLLRRVIHAPFGLALRAARDASGRAQALG 514 Query: 218 ADVNRRLVVIFTVAAAVAGVAGALLAQTTQFVGLDVLGFPRSAELLIILVLGGTGRLYGG 277 DV F +A G+AG L A + + +V G RS + L++++LGG L G Sbjct: 515 MDVRALQWGGFALAGLFCGLAGVLFAFSKGSISPEVAGVNRSVDGLVMVLLGGVQSLAGP 574 Query: 278 LVGALVYMLAQDYLSGLNPAYWQ 300 L+GA V+ QD L YW+ Sbjct: 575 LLGASVFTWLQD-LVARETDYWR 596 >gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 655 Score = 101 bits (252), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 134/258 (51%), Gaps = 14/258 (5%) Query: 42 PDYLVLISQIMIVGLFAVSLDLILGYAGIVSLGHAAFFGLGAYTAGLLAVHGWGEPITGL 101 P YL LI I+I + LD+++GY G VSLGHA FG+G+Y AG+L G PI Sbjct: 26 PYYLHLIETILIYAILLFGLDIVVGYTGQVSLGHAGLFGIGSYAAGVL-FFKLGMPIFVT 84 Query: 102 VLAAI-VAAVAGFLVSFLVVRGADLTRLMVTLGIGLMLFEAANKAAFITGGVDGL---SG 157 V AAI V AV G +++ +R MVTL G ++ N+ F+T G G+ Sbjct: 85 VPAAIAVTAVFGAILALPALRVTGPYLAMVTLAFGTIIQILINEMTFLTEGPLGIKLQKP 144 Query: 158 MVMGKIFGVFEFDLNGRVAYGYSFAVLLLL-FVVLRRMVNSPFGLGLRGIREGGRRMPAI 216 M+ G D V + Y AVL++L +V+ R++ S G + +R+ + Sbjct: 145 MIGG--------DKMSEVQFFYLVAVLMVLSMLVVHRILKSNLGRAFQALRDSPIASDCM 196 Query: 217 GADVNRRLVVIFTVAAAVAGVAGALLAQTTQFVGLDVLGFPRSAELLIILVLGGTGRLYG 276 G V R V F ++AA+AG++GAL A + +++ + F + L+ +++GG G Sbjct: 197 GVSVYRYKVYAFIISAALAGLSGALYAYSEEYISPNTYNFELTIMFLLAVIMGGRKSRIG 256 Query: 277 GLVGALVYMLAQDYLSGL 294 L+GAL+ ++ LS + Sbjct: 257 SLIGALIVVMLPSLLSDI 274 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.330 0.148 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 821,670 Number of extensions: 28353 Number of successful extensions: 204 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 198 Number of HSP's successfully gapped: 24 Length of query: 335 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 249 Effective length of database: 1,212,660 Effective search space: 301952340 Effective search space used: 301952340 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)