BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0104.p (288 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313286|ref|YP_003777378.1| branched-chain amino acid ABC t... 544 e-156 gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC t... 142 3e-35 gi|300312954|ref|YP_003777046.1| amino acid ABC transporter perm... 141 6e-35 gi|300313932|ref|YP_003778024.1| branched-chain amino acid ABC t... 135 4e-33 gi|300313996|ref|YP_003778088.1| urea ABC transporter permease [... 119 2e-28 >gi|300313286|ref|YP_003777378.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 288 Score = 544 bits (1402), Expect = e-156, Method: Compositional matrix adjust. Identities = 284/288 (98%), Positives = 287/288 (99%) Query: 1 MLGNFLGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNRIGV 60 MLGNFLGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLN +GV Sbjct: 1 MLGNFLGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNGMGV 60 Query: 61 PFLATLPLAFIAAAIVGLILERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQ 120 PFLATLPLAFIAAAIVGL+LERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQ Sbjct: 61 PFLATLPLAFIAAAIVGLVLERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQ 120 Query: 121 PVVLPDWLRGQISLLGLDVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAA 180 PVVLPDWLRGQISLLGL+VGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAA Sbjct: 121 PVVLPDWLRGQISLLGLEVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAA 180 Query: 181 AGLGINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIK 240 AGLGINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIK Sbjct: 181 AGLGINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIK 240 Query: 241 GPLLAALILGVFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRRRG 288 GPLLAALILGVFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRRRG Sbjct: 241 GPLLAALILGVFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRRRG 288 >gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 142 bits (358), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 88/272 (32%), Positives = 150/272 (55%) Query: 16 GSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNRIGVPFLATLPLAFIAAAI 75 GS ++S+GL+V G++N IN AHG MLG ++ L+ +G+ + L +A I Sbjct: 22 GSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMGLSYLGLNYWVMLIVAPILVGA 81 Query: 76 VGLILERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQPVVLPDWLRGQISLL 135 G+++E+++ R LYK HL +L + G+T M +G + QP +PD L+G +L Sbjct: 82 FGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSIYGVSGQPYSVPDLLQGATNLG 141 Query: 136 GLDVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAAAGLGINVSRVFSLTF 195 + + YR +++ +IV A +IE+TR GA +RA +N GINV + +LT+ Sbjct: 142 FMVLPNYRAWVVVASLIVCFATWFVIEKTRLGAYLRAGTENPKLVEAFGINVPLMVTLTY 201 Query: 196 ALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIKGPLLAALILGVFDVA 255 G LA G L V+ + P ++ VV +GG G+I G ++ L+LG+ + Sbjct: 202 GFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIGGMGSILGSIITGLVLGLIEGL 261 Query: 256 GKYYVPEIGAFVIYGLMVVLLILFPAGLMRRR 287 + + PE+ A V++ +M ++L++ PAGL + Sbjct: 262 TRVFYPELSATVVFIIMAIVLMVRPAGLFGKE 293 >gi|300312954|ref|YP_003777046.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 304 Score = 141 bits (355), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 104/305 (34%), Positives = 159/305 (52%), Gaps = 40/305 (13%) Query: 11 DGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNRIGVPFLATLPLAF 70 + + +G +LFLI+ GL++ G+MNF+NLAHG+F M+G YV + G +L L +A Sbjct: 11 NSLQFGVMLFLIASGLTLIFGVMNFVNLAHGSFFMIGAYVAAVVAGASGSFWLGLL-VAL 69 Query: 71 IAAAIVGLILERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQPVVLPDWLRG 130 A A +G +LE ++RRLY+ H+ QVL + + G WGP P+ +P G Sbjct: 70 PATAALGFLLEWVVFRRLYQKDHMVQVLATFAFILIFNDGVRMIWGPQPLPLNMPAAFAG 129 Query: 131 QISLLGLDVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAAAGLGINVSRV 190 ++L GL +YR+ ++ V V+V +AL LI RTR G +RA +N +GIN+ + Sbjct: 130 PVNLFGLPYSSYRLLVMAVGVVVAIALYFLINRTRIGMWVRAGANNLEMVTAMGINIRLL 189 Query: 191 FSLTFALGSGLAGLGG-----------GLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTI 239 F L F+ G LA L G G+G DVL L +VV +GG G++ Sbjct: 190 FRLVFSFGLLLAALAGIMLGPLVAVQAGMGDDVLILA-----------FVVVVIGGIGSV 238 Query: 240 KGPLLAALILGVFDVAGKYYVPE-----------------IGAFVIYGLMVVLLILFPAG 282 G + ALI+GV D G+ +P+ +G+ +IY +M+ +L P+G Sbjct: 239 PGAAIGALIVGVVDTLGRSLLPQLFALFLSADAAASVGPALGSMMIYLVMIAVLFWRPSG 298 Query: 283 LMRRR 287 L R Sbjct: 299 LFPAR 303 >gi|300313932|ref|YP_003778024.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 288 Score = 135 bits (340), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 155/278 (55%), Gaps = 1/278 (0%) Query: 11 DGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNRIGVPFLATLPLAF 70 +G+ G L FL++VGLS+ G++ F+N +HGAF +LG Y+C + + +G+ F +L +A Sbjct: 10 NGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFQVTD-LGLGFWWSLLIAP 68 Query: 71 IAAAIVGLILERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQPVVLPDWLRG 130 + + I+ER + R +Y H +LF++G+ + WGP V PD L+G Sbjct: 69 LVVGLFAWIVERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLGNNVAPPDLLQG 128 Query: 131 QISLLGLDVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAAAGLGINVSRV 190 + G YR+F+IG+ ++ + L ++E TR G+ +RA ++ + LG+N++R+ Sbjct: 129 VVMWGGFVYPKYRLFVIGLTAVMALLLWWVLEGTRLGSIVRAGSESTEMVSLLGLNINRI 188 Query: 191 FSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIKGPLLAALILG 250 FSL FALG+ AGL G L + G DP V+ + +VV +GG G+ G L+ +++G Sbjct: 189 FSLVFALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGSFWGALIGGILVG 248 Query: 251 VFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRRRG 288 + E +IY M +++L P GL+ R G Sbjct: 249 IVQSVMSTVWSEGAHLMIYVAMAAVMLLRPNGLLGRPG 286 >gi|300313996|ref|YP_003778088.1| urea ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 538 Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 102/299 (34%), Positives = 164/299 (54%), Gaps = 19/299 (6%) Query: 4 NFLGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGY---VCVTLLNR--- 57 +F G LF G++ GS+L L ++GL++T G+M IN+AHG M+G Y VC + + Sbjct: 241 DFAGKLFYGVSLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFP 300 Query: 58 --IGVPFLATLPLAFIAAAIVGLILERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQW 115 I + LP AFI AA VG+ LER + R LY L+ +L + G++ M + G + Sbjct: 301 GAIDAYLVVALPAAFIVAAAVGIALERLVIRWLY-GRPLETLLCTWGISLMLMQGVRSIF 359 Query: 116 GPTQQPVVLPDWLRGQISLLGLDVGAY-RVFLIGVVVIVTVALGLLIERTRFGAQIRASV 174 G V P W+ G +++LG V +Y R+ ++ + V A+ L++ +TR G +RA Sbjct: 360 GAQNVEVANPSWMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVT 419 Query: 175 DNQVAAAGLGINVSRVFSLTFALGSGLAGLGGGLGIDVLG-LDPTFPVKYMVYFLLVVAV 233 N+ A +G++ ++ +TF LG G+AGL GG+ + LG + P Y+V +VV + Sbjct: 420 QNRRMADCVGVSTGKIDMMTFGLGCGIAGL-GGVALSQLGNVGPDLGQGYIVDSFMVVVL 478 Query: 234 GGAGTIKGPLLAALILGVFDVAGKYYVPEIGAFVIYGLMVVLLILF----PAGLMRRRG 288 GG G + G ++AA LG + K+ P GA + ++V +I+F P GL +G Sbjct: 479 GGVGQLAGTVIAAFGLGEVN---KFLEPMAGAVLAKIAILVFIIVFIQKRPQGLFALKG 534 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.330 0.149 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 808,081 Number of extensions: 32003 Number of successful extensions: 284 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 248 Number of HSP's successfully gapped: 28 Length of query: 288 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 204 Effective length of database: 1,222,130 Effective search space: 249314520 Effective search space used: 249314520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)