BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0103.p (307 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 607 e-175 gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 476 e-136 gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 226 2e-60 gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 211 9e-56 gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [H... 184 7e-48 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 607 bits (1564), Expect = e-175, Method: Compositional matrix adjust. Identities = 302/307 (98%), Positives = 305/307 (99%) Query: 1 MDALGTAARAIKSGETQLMIAGGVESMTRAPFVMGKADSAFSRQAAIQDTTIGWRFVNAL 60 MDALGTAARAIKSGETQLMIAGGVESMTRAPFVMGKADSAFSRQAAIQDTTIGWRFVNAL Sbjct: 94 MDALGTAARAIKSGETQLMIAGGVESMTRAPFVMGKADSAFSRQAAIQDTTIGWRFVNAL 153 Query: 61 MKQKYGVDAMPETAENVAVDFKVSREDQDQFAVRSQAKAAAAQANGNLAQEIVPVVIPQK 120 MKQKYGVDAMPETAENVAVDFKVSR DQDQFAVRSQAKAAAAQANG LAQEIVPVVIPQK Sbjct: 154 MKQKYGVDAMPETAENVAVDFKVSRADQDQFAVRSQAKAAAAQANGTLAQEIVPVVIPQK 213 Query: 121 KGDPITVTQDEHPRATSMEALARLKGVVRPDGTVTAGNASGVNDGACALLLASADAVEKY 180 KGDPITVTQDEHPRATSMEALARLKGVV+PDG+VTAGNASGVNDGACALLLASA+AVEKY Sbjct: 214 KGDPITVTQDEHPRATSMEALARLKGVVKPDGSVTAGNASGVNDGACALLLASAEAVEKY 273 Query: 181 QLKPRARILGMATAGVAPRIMGMGPAPASKKVLAQLGMTIDQMDVIELNEAFASQGLAVL 240 QLKPRARILGMATAGVAPRIMGMGPAPASKKVLAQLGMTIDQMDVIELNEAFASQGLAVL Sbjct: 274 QLKPRARILGMATAGVAPRIMGMGPAPASKKVLAQLGMTIDQMDVIELNEAFASQGLAVL 333 Query: 241 RELGVADDDARVNPNGGAIALGHPLGMSGARLVTTATYQLERTGGRYALCTMCIGVGQGI 300 RELGVADDDARVNPNGGAIALGHPLGMSGARLVTTATYQLERTGGRYALCTMCIGVGQGI Sbjct: 334 RELGVADDDARVNPNGGAIALGHPLGMSGARLVTTATYQLERTGGRYALCTMCIGVGQGI 393 Query: 301 AMVIERV 307 AMVIERV Sbjct: 394 AMVIERV 400 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 476 bits (1226), Expect = e-136, Method: Compositional matrix adjust. Identities = 241/308 (78%), Positives = 272/308 (88%), Gaps = 1/308 (0%) Query: 1 MDALGTAARAIKSGETQLMIAGGVESMTRAPFVMGKADSAFSRQAAIQDTTIGWRFVNAL 60 +DA+G AARAIKSGE QLMIAGGVESMTRAPFVMGKA+SAF+R AAI DTTIGWRFVN L Sbjct: 93 LDAVGMAARAIKSGEVQLMIAGGVESMTRAPFVMGKAESAFARSAAIFDTTIGWRFVNPL 152 Query: 61 MKQKYGVDAMPETAENVAVDFKVSREDQDQFAVRSQAKAAAAQANGNLAQEIVPVVIPQK 120 MK +YG+D+MPETAENVA DF+++R DQD FA+RSQ + AAAQA G A EI P+ IPQK Sbjct: 153 MKAQYGIDSMPETAENVATDFQINRADQDAFALRSQQRWAAAQAAGFFAGEIAPLTIPQK 212 Query: 121 KGDPITVTQDEHPRA-TSMEALARLKGVVRPDGTVTAGNASGVNDGACALLLASADAVEK 179 KGDP+ VT DEHPR T++ LA+LKGVVRPDGTVTAGNASGVNDGACALLLAS A + Sbjct: 213 KGDPLVVTTDEHPRPDTTLATLAKLKGVVRPDGTVTAGNASGVNDGACALLLASPKAADL 272 Query: 180 YQLKPRARILGMATAGVAPRIMGMGPAPASKKVLAQLGMTIDQMDVIELNEAFASQGLAV 239 Y+LKPRAR+LGMATAGVAPRIMG GPAPA +KVLAQ+G+T+ QMDVIELNEAFA+QGLAV Sbjct: 273 YRLKPRARVLGMATAGVAPRIMGFGPAPAVRKVLAQVGLTLAQMDVIELNEAFAAQGLAV 332 Query: 240 LRELGVADDDARVNPNGGAIALGHPLGMSGARLVTTATYQLERTGGRYALCTMCIGVGQG 299 +R+LG+ DD A VNPNGGAIA+GHPLG SGARLVTTA QLER+GGRYALCTMCIGVGQG Sbjct: 333 MRDLGLPDDAAHVNPNGGAIAIGHPLGASGARLVTTAINQLERSGGRYALCTMCIGVGQG 392 Query: 300 IAMVIERV 307 IA+VIERV Sbjct: 393 IALVIERV 400 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 226 bits (575), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 131/307 (42%), Positives = 189/307 (61%), Gaps = 8/307 (2%) Query: 1 MDALGTAARAIKSGETQLMIAGGVESMTRAPFVMGKADSAFSR-QAAIQDTTIGWRFVNA 59 + A+ AA+AI+ G+ Q++IAGG E+M+ +P V+ + F A + DT I V+ Sbjct: 92 LKAVQLAAQAIRCGDAQIVIAGGQENMSASPHVLNNSRDGFRMGDAKLTDTMI----VDG 147 Query: 60 LMKQKYGVDAMPETAENVAVDFKVSREDQDQFAVRSQAKAAAAQANGNLAQEIVPVVIPQ 119 L Y M TAENVA F++SRE+QD FA SQ KA AAQ G EIVP+ I Sbjct: 148 LW-DVYNQYHMGITAENVAKKFEISREEQDAFAAASQNKAEAAQKAGKFKDEIVPIEIKG 206 Query: 120 KKGDPITVTQDEHPRATSMEALARLKGVVRPDGTVTAGNASGVNDGACALLLASADAVEK 179 KK + T + + E+LA L+ GTVTAGNASG+NDGA A+++ SA + Sbjct: 207 KKETVVFDTDEFVKHGVTAESLATLRPAFDKAGTVTAGNASGINDGAAAVVVTSAKLAAE 266 Query: 180 YQLKPRARILGMATAGVAPRIMGMGPAPASKKVLAQLGMTIDQMDVIELNEAFASQGLAV 239 L A+I ++AG+ P IMGMGP PAS+ L + G T +D++E+NEAFA+Q +AV Sbjct: 267 LGLPVLAKIKAYSSAGLDPSIMGMGPVPASQLTLKKAGWTPQDLDLMEINEAFAAQAIAV 326 Query: 240 LRELGVADDDARVNPNGGAIALGHPLGMSGARLVTTATYQLERTGGRYALCTMCIGVGQG 299 +++G D +++N NGGAIALGHP+G SG R++ T +++ R + L ++CIG G G Sbjct: 327 NKQMGW--DTSKINVNGGAIALGHPIGASGCRVLVTLLHEMVRRDAKKGLASLCIGGGMG 384 Query: 300 IAMVIER 306 +A+ +ER Sbjct: 385 VALAVER 391 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 211 bits (536), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 138/317 (43%), Positives = 182/317 (57%), Gaps = 27/317 (8%) Query: 1 MDALGTAARAIKSGETQLMIAGGVESMTRAPFVMGKADSAFSRQAAIQDTTIGWRFVNAL 60 + A+ AA I+ GE +MIA G ESM+ P +MG S A +D +G Sbjct: 99 ITAIAMAADRIRVGEADVMIAAGAESMSMVP-MMGFHPSI--NINAFKDENVG------- 148 Query: 61 MKQKYGVDAMPETAENVAVDFKVSREDQDQFAVRSQAKAAAAQANGNLAQEIVPVVIPQK 120 YG M TAE VA +KVSRE QD+F++ S KA AAQ G A E+ I ++ Sbjct: 149 --MAYG---MGLTAEKVAQQWKVSREAQDEFSLASHQKAIAAQEAGEFADEMTSFEIVER 203 Query: 121 KGD---------PITVTQDEHPRATS-MEALARLKGVVRPDGTVTAGNASGVNDGACALL 170 + TV+ DE PRA S + ALA+LK V G+VTAGN+S +DGA AL+ Sbjct: 204 FPNLATGEIDVKTRTVSLDEGPRADSNLAALAKLKPVFAAKGSVTAGNSSQTSDGAGALI 263 Query: 171 LASADAVEKYQLKPRARILGMATAGVAPRIMGMGPAPASKKVLAQLGMTIDQMDVIELNE 230 + S ++++ L P AR + A GV P IMG+GP A L G+T DQ+D IELNE Sbjct: 264 IVSEKILKQFNLTPLARFVSFAVRGVPPEIMGIGPKEAIPAALKAGGLTQDQIDWIELNE 323 Query: 231 AFASQGLAVLRELGVADDDARVNPNGGAIALGHPLGMSGARLVTTATYQLERTGGRYALC 290 AFA+Q LAV+ +LG+ D ++VNP GGAIALGHPLG +GA T + L R +Y + Sbjct: 324 AFAAQALAVIGDLGL--DPSKVNPMGGAIALGHPLGATGAIRAATTIHALRRKNLKYGMV 381 Query: 291 TMCIGVGQGIAMVIERV 307 TMC+G G G A + ERV Sbjct: 382 TMCVGTGMGAAGIFERV 398 >gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 184 bits (468), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 114/308 (37%), Positives = 171/308 (55%), Gaps = 9/308 (2%) Query: 1 MDALGTAARAIKSGETQLMIAGGVESMTRAPFVMGKADSAFSRQAAIQDTTIGWRFVNAL 60 M A+ +I +G +++AGG+ESM+ AP+++ KA + D + F++ L Sbjct: 97 MQAVMLGHDSILAGSASMVVAGGMESMSNAPYLLPKARRGYRLG---HDRLLDHMFLDGL 153 Query: 61 ---MKQKYGVDAMPETAENVAVDFKVSREDQDQFAVRSQAKAAAAQANGNLAQEIVPVVI 117 +Y M AE+ A +F +R QD FAV+S +A A + G E+VPV + Sbjct: 154 EDAYSDQYRGRLMGTFAEDCASEFGFTRAQQDAFAVQSTLRARQAISGGGFDWEVVPVDV 213 Query: 118 PQKKGDPITVTQDEHPRATSMEALARLKGVVRPDGTVTAGNASGVNDGACALLLASADAV 177 KKG + ++QDE P A ++E +A LK DGTVTA N+S ++DGA ALLL A Sbjct: 214 AGKKGS-VVISQDEGPMAVNLERIATLKPAFSVDGTVTAANSSSISDGAAALLLMRESAA 272 Query: 178 EKYQLKPRARILGMATAGVAPRIMGMGPAPASKKVLAQLGMTIDQMDVIELNEAFASQGL 237 K L P ARILG A+ AP P +K+ A+ G+ D+ E+NEAFA + Sbjct: 273 LKQGLTPLARILGHASYAGAPEKFPTAPIGVLRKIFAKTGLDAASTDLFEINEAFAVVPM 332 Query: 238 AVLRELGVADDDARVNPNGGAIALGHPLGMSGARLVTTATYQLERTGGRYALCTMCIGVG 297 A REL + D ++N +GGA ALGHP+G SGAR++ + L+ G + + ++CIG G Sbjct: 333 AASRELDI--DMEKINVHGGACALGHPIGASGARIIVSLLGALKARGLKTGIASLCIGGG 390 Query: 298 QGIAMVIE 305 + A+ +E Sbjct: 391 EATAIALE 398 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.131 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 917,716 Number of extensions: 37674 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 6 Length of query: 307 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 222 Effective length of database: 1,217,395 Effective search space: 270261690 Effective search space used: 270261690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)