BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0102.p
         (85 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H...   145   4e-37
gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba...   113   3e-27

>gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase
          [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score =  145 bits (367), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)

Query: 1  MKDVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIFGCANQA 60
          MKDVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVI+GCANQA
Sbjct: 1  MKDVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIYGCANQA 60

Query: 61 GEDNRNVXRLGHGCAG 76
          GEDNRNV R+    AG
Sbjct: 61 GEDNRNVARMSLLLAG 76


>gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase
          [Herbaspirillum seropedicae SmR1]
          Length = 401

 Score =  113 bits (282), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 59/74 (79%)

Query: 3  DVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIFGCANQAGE 62
          +  ICDAIRTP GRYGGAL  VRADDL A P+R+LMERNP VDW  V+D+++GCANQAGE
Sbjct: 2  EALICDAIRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAGE 61

Query: 63 DNRNVXRLGHGCAG 76
          DNRNV R+    AG
Sbjct: 62 DNRNVARMAGLLAG 75


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.142    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 228,408
Number of extensions: 7648
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 2
Length of query: 85
Length of database: 1,619,870
Length adjustment: 55
Effective length of query: 30
Effective length of database: 1,359,445
Effective search space: 40783350
Effective search space used: 40783350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 123 (52.0 bits)