BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0100.p (224 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313289|ref|YP_003777381.1| 3-oxoadipate CoA-transferase su... 438 e-124 gi|300313920|ref|YP_003778012.1| acyl CoA:acetate/3-ketoacid CoA... 207 6e-55 >gi|300313289|ref|YP_003777381.1| 3-oxoadipate CoA-transferase subunit A [Herbaspirillum seropedicae SmR1] Length = 224 Score = 438 bits (1126), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/224 (94%), Positives = 221/224 (98%) Query: 1 VINKISDSLEQAVADIHDGATIMIGGFGNAGMPSALIDALIAEGARDLTIVNNNAGNGDT 60 +INKISDSLEQAVADIHDGATIMIGGFGNAGMPSALIDALIA+GARDLTIVNNNAGNG+T Sbjct: 1 MINKISDSLEQAVADIHDGATIMIGGFGNAGMPSALIDALIAQGARDLTIVNNNAGNGET 60 Query: 61 GLAALLKTKRVKKIICSFPRQTDSHVFDALYRAGEIELELTPQGNLAERIRAAGAGIGGF 120 GLAALLKTKRVKKI+CSFPRQ+DS VFDALYR+GEIELELTPQGNLAERIRAAGAGIGGF Sbjct: 61 GLAALLKTKRVKKIVCSFPRQSDSQVFDALYRSGEIELELTPQGNLAERIRAAGAGIGGF 120 Query: 121 FSPTGYGTMLAEGKETRLIDGKHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPI 180 FSPTGYGTMLAEGKETR I+G+HYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPI Sbjct: 121 FSPTGYGTMLAEGKETREINGRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPI 180 Query: 181 MAMAAKVTIAQVTEVVELGQLDPENIITPGIFVQRIVQTKEAQQ 224 MAMAAK TIAQV+EVVELGQLDPENI+TPGIFVQRIVQTKEAQQ Sbjct: 181 MAMAAKCTIAQVSEVVELGQLDPENIVTPGIFVQRIVQTKEAQQ 224 >gi|300313920|ref|YP_003778012.1| acyl CoA:acetate/3-ketoacid CoA transferase subunit alpha [Herbaspirillum seropedicae SmR1] Length = 231 Score = 207 bits (527), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 116/217 (53%), Positives = 152/217 (70%), Gaps = 3/217 (1%) Query: 2 INKISDSLEQAVADI-HDGATIMIGGFGNAGMPSALIDALIAEGARDLTIVNNNAGNGDT 60 +NK+ A+ DI DG TI +GGFG G+P ALI AL G ++LT ++NNAG Sbjct: 1 MNKVYPDAATALKDIVKDGQTIAVGGFGLCGIPEALIAALRDSGVQNLTAISNNAGVDGF 60 Query: 61 GLAALLKTKRVKKIICSFPRQTDSHVFDALYRAGEIELELTPQGNLAERIRAAGAGIGGF 120 GL LL T+++KK+I S+ + F+ Y AGE+ELE TPQG LAE++RA GAGI F Sbjct: 61 GLGQLLTTRQIKKMIASYVGENKE--FERQYLAGELELEFTPQGTLAEKLRAGGAGIPAF 118 Query: 121 FSPTGYGTMLAEGKETRLIDGKHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPI 180 F+ TG GT++AEGKE R DG+ YV+E + AD +L+KA + D+ GNLV+ KTARNF P Sbjct: 119 FTKTGVGTLVAEGKEVREFDGERYVMERSLVADVSLVKAHKADKAGNLVFNKTARNFNPN 178 Query: 181 MAMAAKVTIAQVTEVVELGQLDPENIITPGIFVQRIV 217 +AMA KVT+ +V E+VE+GQLDP+ I TPGIFV RIV Sbjct: 179 VAMAGKVTVVEVEELVEVGQLDPDQIHTPGIFVHRIV 215 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 648,136 Number of extensions: 25247 Number of successful extensions: 79 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 78 Number of HSP's successfully gapped: 2 Length of query: 224 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 142 Effective length of database: 1,231,600 Effective search space: 174887200 Effective search space used: 174887200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)