BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0099.p (313 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313290|ref|YP_003777382.1| IclR family transcription regul... 509 e-146 gi|300313272|ref|YP_003777364.1| transcription regulator protein... 199 3e-52 gi|300313063|ref|YP_003777155.1| transcription regulator protein... 162 5e-41 gi|300310493|ref|YP_003774585.1| transcription regulator protein... 152 3e-38 gi|300313062|ref|YP_003777154.1| IclR family transcription regul... 147 9e-37 >gi|300313290|ref|YP_003777382.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 509 bits (1312), Expect = e-146, Method: Compositional matrix adjust. Identities = 252/260 (96%), Positives = 258/260 (99%) Query: 54 LTIAEEIDALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLK 113 +TIA+EIDALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLK Sbjct: 1 MTIAQEIDALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLK 60 Query: 114 QLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDNEV 173 QLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDD+EV Sbjct: 61 QLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEV 120 Query: 174 LYVARSATSRVMSVALNTGSRLPAYCTSLGRAMLAHLPDDQLKAYFEKVKLRALTDKTVV 233 LYVARSA SRVMSVALNTGSRLPAYCTSLGRAMLAHLP+DQLKAYF+KVKLRALT+KTVV Sbjct: 121 LYVARSAASRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVV 180 Query: 234 SQKRLRDILAGVRAQGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQM 293 SQKRLRDILAGVRA GYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQM Sbjct: 181 SQKRLRDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQM 240 Query: 294 EEEILPVLLRGAQELSVLLP 313 EEEILPVLLRGAQELSVLLP Sbjct: 241 EEEILPVLLRGAQELSVLLP 260 >gi|300313272|ref|YP_003777364.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 266 Score = 199 bits (506), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 108/246 (43%), Positives = 151/246 (61%) Query: 67 SFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADSDVNNFS 126 + L +GL VI AF R LTIA+++Q TG+ RAA RR L TL LGY D FS Sbjct: 21 DLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMRHDNKTFS 80 Query: 127 LRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDNEVLYVARSATSRVMS 186 L P +L LG SYL S L QP L ++ +LGE+ S VLD ++++ VA + +++S Sbjct: 81 LTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSAGQLVS 140 Query: 187 VALNTGSRLPAYCTSLGRAMLAHLPDDQLKAYFEKVKLRALTDKTVVSQKRLRDILAGVR 246 L G+R+PAYCT+ GR +LA+LP QL A + + A+T T+ +RL +A R Sbjct: 141 TTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEAITAHTITDVERLGLEIARAR 200 Query: 247 AQGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEEEILPVLLRGAQ 306 QGYA++D+ELE+GLR++AVPVR G V+AA+N+ A R+ + M E LP +L+ Sbjct: 201 VQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAGRMKLEDMVERCLPAMLKIQV 260 Query: 307 ELSVLL 312 EL LL Sbjct: 261 ELGALL 266 >gi|300313063|ref|YP_003777155.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 162 bits (409), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 138/241 (57%) Query: 68 FMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADSDVNNFSL 127 ++ L +GL ++ AF + +T AQ++ +TG+ R A RR L TL+ LGY S+ F+L Sbjct: 29 WIAGLEKGLLILEAFDFDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYLHSEGKTFAL 88 Query: 128 RPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDNEVLYVARSATSRVMSV 187 P++L +G+SY S PL QP+L I+ GE+ +VLD +++++AR+ +RVM+ Sbjct: 89 TPRVLKVGWSYFDSAPLPRILQPFLQQITGQTGEAVYASVLDGWDLVFIARNGATRVMTT 148 Query: 188 ALNTGSRLPAYCTSLGRAMLAHLPDDQLKAYFEKVKLRALTDKTVVSQKRLRDILAGVRA 247 G+R+PA S G ML+ LP+ Q++ + + T T+ +L ++A R Sbjct: 149 GFVLGARVPAQLASPGIVMLSALPEQQVRDWLATCAMTPFTPHTITDPDQLYALIAQARQ 208 Query: 248 QGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEEEILPVLLRGAQE 307 GYAV++++L+ G+R IAVP++ V+ AL++ A + Q ILP L + A Sbjct: 209 LGYAVVEQQLQTGVRGIAVPLKNRHAKVIGALSLSLPMAAEAREQTLARILPALQQAANA 268 Query: 308 L 308 L Sbjct: 269 L 269 >gi|300310493|ref|YP_003774585.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 152 bits (385), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 147/251 (58%), Gaps = 2/251 (0%) Query: 61 DALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGY--A 118 D +D F SL +GLAV+RAF+ R++T+ ++ TGI +++ +R +HTL+ LGY Sbjct: 6 DTASDLLFNQSLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYICK 65 Query: 119 DSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDNEVLYVAR 178 + L PK++ +GY+YL++ L A P+L+ ++ GE+ +L D E++YVAR Sbjct: 66 HPKTRRYQLTPKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEMVYVAR 125 Query: 179 SATSRVMSVALNTGSRLPAYCTSLGRAMLAHLPDDQLKAYFEKVKLRALTDKTVVSQKRL 238 S+ + + + GSR+P YCT+ GRA L+ L ++ +A E + T T + + Sbjct: 126 FVASKFIPIHMPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVEDI 185 Query: 239 RDILAGVRAQGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEEEIL 298 +LA R +G+A EEL +G SIA PV + +A+++V A +R SV + E+++ Sbjct: 186 MQLLAASRERGFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEAEKKLG 245 Query: 299 PVLLRGAQELS 309 P++L A+ +S Sbjct: 246 PLVLECARAIS 256 >gi|300313062|ref|YP_003777154.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 147 bits (372), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 131/227 (57%), Gaps = 10/227 (4%) Query: 68 FMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADSDVNNFSL 127 + L +G VI AF L+ ++++++ G+ R+A RR L TL G A SD F L Sbjct: 16 LIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMAASDGKKFWL 75 Query: 128 RPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDNEVLYVARSATSRVMSV 187 P++L LG SYL S + + P+L +++ L ES + ++LD +E++YV R +++++ Sbjct: 76 MPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAAQLVNA 135 Query: 188 ALNTGSRLPAYCTSLGRAMLAHLPDDQLKAYFEKVKL-----RALTDKTVVSQKRLRDIL 242 G+RLPAY T+ GR +L D +++AY E+V L A+TDK + Q+ L Sbjct: 136 GFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAALFQEILT--- 192 Query: 243 AGVRAQGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVS 289 +R QGY + + + E+G+R IA+ V+ +G V+ AL+V + A S Sbjct: 193 --MRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACS 237 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.127 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 744,053 Number of extensions: 27609 Number of successful extensions: 131 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 10 Length of query: 313 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 228 Effective length of database: 1,217,395 Effective search space: 277566060 Effective search space used: 277566060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)