BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0093.p (406 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313295|ref|YP_003777387.1| acetyl-CoA acetyltransferase [H... 743 0.0 gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 202 3e-53 gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 201 8e-53 gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 188 6e-49 gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 163 2e-41 >gi|300313295|ref|YP_003777387.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 417 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/417 (92%), Positives = 392/417 (94%), Gaps = 11/417 (2%) Query: 1 MAQAAFYSSFKDIWLVGGVRTPMVDYCTSFSQLSPTDMGIKVAREVLARTGIAATDIGSV 60 MAQAAFYSSFKDIWLVGGVRTPMVDYCTSFSQLSPTDMGIKVAREVLARTGI DIGSV Sbjct: 1 MAQAAFYSSFKDIWLVGGVRTPMVDYCTSFSQLSPTDMGIKVAREVLARTGIDPADIGSV 60 Query: 61 VAGNMAPGDAYQYMLPRHIGLYAGVPITTPAIMVQRICGTGFELIRQAGDQIERGYTETA 120 VAGNMAPGDAYQYMLPRHIGLYAGVPI+TPAIMVQRICGTGFELIRQAGDQIERGYTE A Sbjct: 61 VAGNMAPGDAYQYMLPRHIGLYAGVPISTPAIMVQRICGTGFELIRQAGDQIERGYTEAA 120 Query: 121 LIVGSESMTRNPIAAFGHRTGFKLGAPVEFQDYMWEALVDPAPGITMPQTAENLAKX--- 177 LIVGSESMTRNPIAAFGHR+GFKLGAPVEFQDYMWEALVDPAPGITMPQTAENLAK Sbjct: 121 LIVGSESMTRNPIAAFGHRSGFKLGAPVEFQDYMWEALVDPAPGITMPQTAENLAKKYGI 180 Query: 178 --------PPPPPPRALKAQAAGFHAGEIVPVVNETFRLDGYNDRHIKLQGKTSEAATDT 229 RALKAQAAGFHAGEIVPVVNETFRLDGYNDRHIKLQGK SEAA DT Sbjct: 181 TRAEVDEYAAYSFERALKAQAAGFHAGEIVPVVNETFRLDGYNDRHIKLQGKLSEAAADT 240 Query: 230 HPRPSPVEVLAKLRTLYPDGVQTGGNSSALVDAAAATIVASGDYVRRHDKQPLARVVAAA 289 HPRPSPVEVLAKLRTLYPDGVQTGGNSSALVDAAAATIVASGDYVRR+DK PLARVVAAA Sbjct: 241 HPRPSPVEVLAKLRTLYPDGVQTGGNSSALVDAAAATIVASGDYVRRNDKAPLARVVAAA 300 Query: 290 VAGVPPEIMGIGPVPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGIDRDKLNV 349 VAGVPPEIMGIGPVPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGIDR++LNV Sbjct: 301 VAGVPPEIMGIGPVPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGIDRERLNV 360 Query: 350 NGGAIALGHPLAATGVRLSITAAREMNRRGARYCVASACIGGGQGIALLLENPSASH 406 NGGAIALGHPLAATGVRLSITAAREMNRRGARYCVASACIGGGQGIALLLENPSASH Sbjct: 361 NGGAIALGHPLAATGVRLSITAAREMNRRGARYCVASACIGGGQGIALLLENPSASH 417 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 202 bits (515), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 140/412 (33%), Positives = 209/412 (50%), Gaps = 35/412 (8%) Query: 10 FKDIWLVGGVRTPMVDYCTSFSQLSPTDMGIKVAREVLART-GIAATDIGSVVAGNMAPG 68 KD+++ +RTP+ Y + + D+G R ++ R + + V+ G Sbjct: 1 MKDVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIYGCANQA 60 Query: 69 DAYQYMLPRHIGLYAGVPITTPAIMVQRICGTGFELIRQAGDQIERGYTETALIVGSESM 128 + R L AG+P P + R+CG+G + + A I+ G T+ + G ESM Sbjct: 61 GEDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESM 120 Query: 129 TRNPIAAFGHRTGFKLGAPVEFQDYMW---EALVDPAPGI-TMPQTAENLAKXPPPPPPR 184 TR P + F A ++ W AL+ G+ MP+TAEN+A R Sbjct: 121 TRAPFVMGKADSAFSRQAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVA--VDFKVSR 178 Query: 185 ALKAQAA-------------GFHAGEIVPVVNETFRLDGYNDRHIKLQGKTSEAATDTHP 231 A + Q A G A EIVPVV + +G D HP Sbjct: 179 ADQDQFAVRSQAKAAAAQANGTLAQEIVPVVIP------------QKKGDPITVTQDEHP 226 Query: 232 RPSPVEVLAKLR-TLYPDGVQTGGNSSALVDAAAATIVASGDYVRRHDKQPLARVVAAAV 290 R + +E LA+L+ + PDG T GN+S + D A A ++AS + V ++ +P AR++ A Sbjct: 227 RATSMEALARLKGVVKPDGSVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMAT 286 Query: 291 AGVPPEIMGIGPVPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGI--DRDKLN 348 AGV P IMG+GP PA + +L + G+T+ + E+NEA +Q +AV RELG+ D ++N Sbjct: 287 AGVAPRIMGMGPAPASKKVLAQLGMTIDQMDVIELNEAFASQGLAVLRELGVADDDARVN 346 Query: 349 VNGGAIALGHPLAATGVRLSITAAREMNRRGARYCVASACIGGGQGIALLLE 400 NGGAIALGHPL +G RL TA ++ R G RY + + CIG GQGIA+++E Sbjct: 347 PNGGAIALGHPLGMSGARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIE 398 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 201 bits (512), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 137/404 (33%), Positives = 204/404 (50%), Gaps = 31/404 (7%) Query: 12 DIWLVGGVRTPMVDYCTSFSQLSPTDMGIKVAREVLARTGIAATDIGSVVAGNMAPGDAY 71 D+ +V RT + + + S+++ D+G +V + +LA+TGI I V+ G + Sbjct: 3 DVVIVAAQRTAIGKFGGALSKIAAADLGAQVIKALLAKTGIKPEAISEVILGQVLTAGLG 62 Query: 72 QYMLPRHIGLYAGVPITTPAIMVQRICGTGFELIRQAGDQIERGYTETALIVGSESMTRN 131 Q + + + +G+P PA +V ++CG+G + ++ A I G + + G E+M+ + Sbjct: 63 QNPARQSV-IKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENMSAS 121 Query: 132 PIAAFGHRTGFKLGAPVEFQDYMWEALVDPAPGITMPQTAENLAKX-----------PPP 180 P R GF++G + + L D M TAEN+AK Sbjct: 122 PHVLNNSRDGFRMGDAKLTDTMIVDGLWDVYNQYHMGITAENVAKKFEISREEQDAFAAA 181 Query: 181 PPPRALKAQAAGFHAGEIVPVVNETFRLDGYNDRHIKLQGKTSEAATDTH---PRPSPVE 237 +A AQ AG EIVP I+++GK DT E Sbjct: 182 SQNKAEAAQKAGKFKDEIVP---------------IEIKGKKETVVFDTDEFVKHGVTAE 226 Query: 238 VLAKLRTLYPD-GVQTGGNSSALVDAAAATIVASGDYVRRHDKQPLARVVAAAVAGVPPE 296 LA LR + G T GN+S + D AAA +V S LA++ A + AG+ P Sbjct: 227 SLATLRPAFDKAGTVTAGNASGINDGAAAVVVTSAKLAAELGLPVLAKIKAYSSAGLDPS 286 Query: 297 IMGIGPVPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGIDRDKLNVNGGAIAL 356 IMG+GPVPA + L++ G T D+ EINEA AQ +AV +++G D K+NVNGGAIAL Sbjct: 287 IMGMGPVPASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGWDTSKINVNGGAIAL 346 Query: 357 GHPLAATGVRLSITAAREMNRRGARYCVASACIGGGQGIALLLE 400 GHP+ A+G R+ +T EM RR A+ +AS CIGGG G+AL +E Sbjct: 347 GHPIGASGCRVLVTLLHEMVRRDAKKGLASLCIGGGMGVALAVE 390 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 188 bits (478), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 138/395 (34%), Positives = 197/395 (49%), Gaps = 18/395 (4%) Query: 19 VRTPMVDYCTSFSQLSPTDMGIKVAREVLART-GIAATDIGSVVAGNMAPGDAYQYMLPR 77 +RTP Y + + D+ R ++ R G+ + + ++ G + R Sbjct: 9 IRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAGEDNRNVAR 68 Query: 78 HIGLYAGVPITTPAIMVQRICGTGFELIRQAGDQIERGYTETALIVGSESMTRNPIAAFG 137 GL AG+PI P V R+CG+ + + A I+ G + + G ESMTR P Sbjct: 69 MAGLLAGLPIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTRAPFVMGK 128 Query: 138 HRTGFKLGAPVEFQDYMW---EALVDPAPGI-TMPQTAENLAK----XPPPPPPRALKAQ 189 + F A + W L+ GI +MP+TAEN+A AL++Q Sbjct: 129 AESAFARSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFQINRADQDAFALRSQ 188 Query: 190 AAGFHAGEIVPVVNETFRLDGYNDRHIKLQGKTSEAATDTHPRP-SPVEVLAKLR-TLYP 247 A E L + +G TD HPRP + + LAKL+ + P Sbjct: 189 QRWAAAQAAGFFAGEIAPLT-----IPQKKGDPLVVTTDEHPRPDTTLATLAKLKGVVRP 243 Query: 248 DGVQTGGNSSALVDAAAATIVASGDYVRRHDKQPLARVVAAAVAGVPPEIMGIGPVPAIR 307 DG T GN+S + D A A ++AS + +P ARV+ A AGV P IMG GP PA+R Sbjct: 244 DGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAPAVR 303 Query: 308 TLLERNGLTVADIGCFEINEAQGAQIVAVERELGIDRD--KLNVNGGAIALGHPLAATGV 365 +L + GLT+A + E+NEA AQ +AV R+LG+ D +N NGGAIA+GHPL A+G Sbjct: 304 KVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGHPLGASGA 363 Query: 366 RLSITAAREMNRRGARYCVASACIGGGQGIALLLE 400 RL TA ++ R G RY + + CIG GQGIAL++E Sbjct: 364 RLVTTAINQLERSGGRYALCTMCIGVGQGIALVIE 398 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 163 bits (413), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 133/408 (32%), Positives = 193/408 (47%), Gaps = 33/408 (8%) Query: 10 FKDIWLVGGVRTPMVDYCTS-FSQLSPTDMGIKVAREVLART-GIAATDIGSVVAGNMAP 67 +D ++V RTP+ F P D+ ++ + +A+ G+ I + G P Sbjct: 5 LQDAYIVAATRTPIGKAPRGMFKNTRPDDLLVRAIQSAVAQVPGLDPKLIEDAIVGCSFP 64 Query: 68 GDAYQYMLPRHIGLYAGVPITTPAIMVQRICGTGFELIRQAGDQIERGYTETALIVGSES 127 A + R+ L AG+P T + + R C +G I A D+I G + + G+ES Sbjct: 65 EGAQGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAAGAES 124 Query: 128 MTRNPIAAFG---HRTGFK---------LGAPVEFQDYMWEALVDPAPGITMPQTAENLA 175 M+ P+ F + FK +G E W+ + Q +LA Sbjct: 125 MSMVPMMGFHPSININAFKDENVGMAYGMGLTAEKVAQQWKVSREA-------QDEFSLA 177 Query: 176 KXPPPPPPRALKAQAAGFHAGEIVPV-VNETFRLDGYNDRHIKLQGKTSEAATDTHPRP- 233 +A+ AQ AG A E+ + E F N ++ KT + D PR Sbjct: 178 SHQ-----KAIAAQEAGEFADEMTSFEIVERFP----NLATGEIDVKTRTVSLDEGPRAD 228 Query: 234 SPVEVLAKLRTLYP-DGVQTGGNSSALVDAAAATIVASGDYVRRHDKQPLARVVAAAVAG 292 S + LAKL+ ++ G T GNSS D A A I+ S +++ + PLAR V+ AV G Sbjct: 229 SNLAALAKLKPVFAAKGSVTAGNSSQTSDGAGALIIVSEKILKQFNLTPLARFVSFAVRG 288 Query: 293 VPPEIMGIGPVPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGIDRDKLNVNGG 352 VPPEIMGIGP AI L+ GLT I E+NEA AQ +AV +LG+D K+N GG Sbjct: 289 VPPEIMGIGPKEAIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGLDPSKVNPMGG 348 Query: 353 AIALGHPLAATGVRLSITAAREMNRRGARYCVASACIGGGQGIALLLE 400 AIALGHPL ATG + T + R+ +Y + + C+G G G A + E Sbjct: 349 AIALGHPLGATGAIRAATTIHALRRKNLKYGMVTMCVGTGMGAAGIFE 396 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,270,838 Number of extensions: 53360 Number of successful extensions: 210 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 196 Number of HSP's successfully gapped: 6 Length of query: 406 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 319 Effective length of database: 1,207,925 Effective search space: 385328075 Effective search space used: 385328075 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)