BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0089.p
         (159 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313298|ref|YP_003777390.1| branched-chain amino acid ABC t...   322   6e-90
gi|300313408|ref|YP_003777500.1| branched-chain amino acid ABC t...   146   9e-37
gi|300310681|ref|YP_003774773.1| amino acid ABC transporter peri...   140   4e-35

>gi|300313298|ref|YP_003777390.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 381

 Score =  322 bits (826), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 153/159 (96%), Positives = 157/159 (98%)

Query: 1   MPHKALIERGYKGKIFQTHSAASRDLIRLGGKDVEGSYVISGPAVVPEALPDSNPSKKLA 60
           MPHKALIERGYKGKIFQTHSAASRDLIRLGGKDVEG+YVISGPAVVPEALPDSN SKKLA
Sbjct: 223 MPHKALIERGYKGKIFQTHSAASRDLIRLGGKDVEGAYVISGPAVVPEALPDSNASKKLA 282

Query: 61  MDFVTRYEKQFGAGTRNLFAAHTYDAQLVLQKVVPEALKKAKPGTPAFRAALKEALETAG 120
           MDFVTRYEKQFGAG+RNLFAAHTYDAQLVLQKVVPEALKKAKPGTPAFRAALKEALET+G
Sbjct: 283 MDFVTRYEKQFGAGSRNLFAAHTYDAQLVLQKVVPEALKKAKPGTPAFRAALKEALETSG 342

Query: 121 PIQISQGTLNYSAKDHFGLGDDARIMLTIQNGNWKAVNP 159
           PIQI+QGTLNYS KDHFGLGDDARIMLTIQNGNWKAVNP
Sbjct: 343 PIQITQGTLNYSPKDHFGLGDDARIMLTIQNGNWKAVNP 381


>gi|300313408|ref|YP_003777500.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 381

 Score =  146 bits (368), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 67/155 (43%), Positives = 102/155 (65%)

Query: 1   MPHKALIERGYKGKIFQTHSAASRDLIRLGGKDVEGSYVISGPAVVPEALPDSNPSKKLA 60
           +P +AL ERG+KG+I+QTH  A+ D +R+GGK ++G+ + +GP +V   LP SNP +K+A
Sbjct: 224 VPQRALKERGFKGQIYQTHGVANADFLRVGGKMLDGTLLPAGPVLVAAQLPASNPIRKVA 283

Query: 61  MDFVTRYEKQFGAGTRNLFAAHTYDAQLVLQKVVPEALKKAKPGTPAFRAALKEALETAG 120
           +D+ T+YE   G  + +LF  + +DA ++L+  +P ALK AKPGTP FRAAL++ LE   
Sbjct: 284 LDYTTKYEAVHGKDSVSLFGGYAWDAGVLLRWAIPVALKGAKPGTPEFRAALRDVLEATK 343

Query: 121 PIQISQGTLNYSAKDHFGLGDDARIMLTIQNGNWK 155
            +    G    S+ DH GL   A +M+ I +G W+
Sbjct: 344 EVTGVHGVYTMSSTDHLGLDQRAAVMVKIVDGAWQ 378


>gi|300310681|ref|YP_003774773.1| amino acid ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 385

 Score =  140 bits (354), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 1   MPHKALIERGYKGKIFQTHSAASRDLIRLGGKDVEGSYVISGPAVVPEALPDSNPSKKLA 60
           +P   L ++GYKGKI+QTH AA    ++LG   VEG+ + +   +V   +PDSNPSKK+A
Sbjct: 228 LPQTTLFDQGYKGKIYQTHGAALPAFLQLGKNKVEGTILAASLMLVLPEIPDSNPSKKVA 287

Query: 61  MDFVTRYEKQFGAGTRNLFAAHTYDAQLVLQKVVPEALKKAKPGTPAFRAALKEALETAG 120
            D++  Y+K + A     F A+ YDA L+L+K +P A +KAKPG+  FRAAL++ALE   
Sbjct: 288 TDYIEAYKKMYNA-VPATFGANVYDAGLLLEKAIPVAARKAKPGSKEFRAALRDALENTK 346

Query: 121 PIQISQGTLNYSAKDHFGLGDDARIMLTIQNGNW 154
            +  +QG  N SA DH G  D  R ++T++ GNW
Sbjct: 347 EVVGTQGVYNMSATDHSGFDDRGRELITVKGGNW 380


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 520,852
Number of extensions: 20181
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 3
Length of query: 159
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,250,540
Effective search space: 101293740
Effective search space used: 101293740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)