BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0086.p (239 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC t... 441 e-125 gi|300313405|ref|YP_003777497.1| branched-chain amino acid ABC t... 320 6e-89 gi|300310683|ref|YP_003774775.1| amino acid ABC transporter comp... 286 1e-78 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 209 2e-55 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 207 6e-55 >gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 597 Score = 441 bits (1135), Expect = e-125, Method: Compositional matrix adjust. Identities = 233/239 (97%), Positives = 234/239 (97%) Query: 1 VAVNDVSFKVKAGEIVGLIGPNGAGKSTTFNLVTGLLHASGGRVSFNGRDIAGLPARAIA 60 VAVNDVSFKVKAGEIVGLIGPNGAGKSTTFNLVTGLLHASGGRV FNGRDIAGLPARAIA Sbjct: 359 VAVNDVSFKVKAGEIVGLIGPNGAGKSTTFNLVTGLLHASGGRVGFNGRDIAGLPARAIA 418 Query: 61 RLGIARTFQHVRLLPGMTVLENVALGAHMRSRQSFLSNTVNAMLHLERAEEQALLDEAAR 120 RLGIARTFQHVRLLPGMTVLENVALGAHMRS+Q FL NTVNAMLHLERAEEQALLDEAAR Sbjct: 419 RLGIARTFQHVRLLPGMTVLENVALGAHMRSQQGFLKNTVNAMLHLERAEEQALLDEAAR 478 Query: 121 ALHRVGLQHLMHEQAGNLALGQQRILEIARALCCDPLLLLLDEPAAGLRHLEKQALSKVL 180 ALHRVGLQHLMHEQAGNLALGQQRILEIARALCCDPLLLLLDEPAAGLRHLEKQALSKVL Sbjct: 479 ALHRVGLQHLMHEQAGNLALGQQRILEIARALCCDPLLLLLDEPAAGLRHLEKQALSKVL 538 Query: 181 QELRADGMSILLVEHDMEFVMELTDHIVVMEFGTKIAEGTPQEIQRHPAVIEAYLGGIE 239 QELRADGMSILLVEHDMEFVMELTDHIVVMEFG KIAEGTPQEI RHPAVIEAYLGGIE Sbjct: 539 QELRADGMSILLVEHDMEFVMELTDHIVVMEFGAKIAEGTPQEIARHPAVIEAYLGGIE 597 >gi|300313405|ref|YP_003777497.1| branched-chain amino acid ABC transporter ATP-binding protein/permease [Herbaspirillum seropedicae SmR1] Length = 596 Score = 320 bits (820), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 160/239 (66%), Positives = 193/239 (80%) Query: 1 VAVNDVSFKVKAGEIVGLIGPNGAGKSTTFNLVTGLLHASGGRVSFNGRDIAGLPARAIA 60 VAVN+VSF VKAGEIVGLIGPNGAGKSTTFNLVTG+L S G++ + G+ +AGL +R I+ Sbjct: 358 VAVNNVSFSVKAGEIVGLIGPNGAGKSTTFNLVTGVLSVSSGKLLYRGQSLAGLSSRDIS 417 Query: 61 RLGIARTFQHVRLLPGMTVLENVALGAHMRSRQSFLSNTVNAMLHLERAEEQALLDEAAR 120 GIARTFQHVRL+PGM+VLEN A+GA R + + + ++L R+EE +L EA R Sbjct: 418 SRGIARTFQHVRLVPGMSVLENAAMGAFRRGQFAPQRGILASLLRANRSEEARILSEARR 477 Query: 121 ALHRVGLQHLMHEQAGNLALGQQRILEIARALCCDPLLLLLDEPAAGLRHLEKQALSKVL 180 L RVGL L+ AG+LALGQQRILEIARALCCDP LLLLDEPAAGLR EK+AL+ +L Sbjct: 478 QLERVGLGDLVDRPAGSLALGQQRILEIARALCCDPALLLLDEPAAGLRLKEKEALAALL 537 Query: 181 QELRADGMSILLVEHDMEFVMELTDHIVVMEFGTKIAEGTPQEIQRHPAVIEAYLGGIE 239 +LR +GM++LLVEHDM+FVM+LTDHIVVMEFG KIAEGTP +IQ HPAV+EAYLGG + Sbjct: 538 DKLRGEGMAVLLVEHDMDFVMQLTDHIVVMEFGAKIAEGTPAQIQVHPAVLEAYLGGAQ 596 >gi|300310683|ref|YP_003774775.1| amino acid ABC transporter composite ATP-binding protein/permease [Herbaspirillum seropedicae SmR1] Length = 627 Score = 286 bits (732), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 146/236 (61%), Positives = 187/236 (79%), Gaps = 4/236 (1%) Query: 1 VAVNDVSFKVKAGEIVGLIGPNGAGKSTTFNLVTGLLHASGGRVSFNGRDIAGLPARAIA 60 VA N++S KV AGE++ LIGPNGAGKST FN ++G+ + G V F G+++ G +R IA Sbjct: 369 VANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTSGSVQFRGQEVTGRGSRHIA 428 Query: 61 RLGIARTFQHVRLLPGMTVLENVALGAHMRSRQSFLSNTVNAMLHLERAEEQALLDEAAR 120 LG++R+FQHVRL+P MTVLENVA+GA++R ++ L++ ML L+R EE +L EAAR Sbjct: 429 GLGMSRSFQHVRLMPRMTVLENVAIGAYLRGQRGVLAS----MLRLDRKEEARILAEAAR 484 Query: 121 ALHRVGLQHLMHEQAGNLALGQQRILEIARALCCDPLLLLLDEPAAGLRHLEKQALSKVL 180 + RVGL+ M+E AG L+LGQQRILEIARAL DP LLLLDEPAAGLR EKQAL+++L Sbjct: 485 QIERVGLKAQMYELAGALSLGQQRILEIARALAADPCLLLLDEPAAGLRLGEKQALAELL 544 Query: 181 QELRADGMSILLVEHDMEFVMELTDHIVVMEFGTKIAEGTPQEIQRHPAVIEAYLG 236 ++LR +GM+ILLVEHDM+FVMEL D IVVM+FG KIAEG P +IQ +PAV+EAYLG Sbjct: 545 RKLRGEGMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLPADIQNNPAVLEAYLG 600 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 209 bits (531), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 109/237 (45%), Positives = 156/237 (65%), Gaps = 6/237 (2%) Query: 2 AVNDVSFKVKAGEIVGLIGPNGAGKSTTFNLVTGLLHASGGRVSFNGRDIAGLPARAIAR 61 A+N V ++ G+I GLIGPNGAGK+T FN++TGL G +G+ + +A+ Sbjct: 20 ALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFELDGKPYSPSAPHEVAK 79 Query: 62 LGIARTFQHVRLLPGMTVLENVALGAHMRSRQSFLSNTVNAMLHLE--RAEEQALLDEAA 119 GIARTFQ++RL MTVLENV +G H+R+RQ N A+ + R EE A+ +++ Sbjct: 80 AGIARTFQNIRLFGEMTVLENVMVGCHVRTRQ----NVFGAVFRHKAAREEEAAIREKSQ 135 Query: 120 RALHRVGLQHLMHEQAGNLALGQQRILEIARALCCDPLLLLLDEPAAGLRHLEKQALSKV 179 + L VG+ A +L+ G QR LEIARAL DP LL LDEPAAG+ EK L ++ Sbjct: 136 KLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKLGLREL 195 Query: 180 LQELRADGMSILLVEHDMEFVMELTDHIVVMEFGTKIAEGTPQEIQRHPAVIEAYLG 236 L +++A+G +ILL+EHD++ +M L + I V+++G IAEG P ++Q++PAVIEAYLG Sbjct: 196 LVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKNPAVIEAYLG 252 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 207 bits (527), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 108/237 (45%), Positives = 156/237 (65%), Gaps = 6/237 (2%) Query: 2 AVNDVSFKVKAGEIVGLIGPNGAGKSTTFNLVTGLLHASGGRVSFNGRDIAGLPARAIAR 61 A+N V ++ G+I GLIGPNGAGK+T FN++TGL G +G+ + +A+ Sbjct: 20 ALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFELDGKPYSPSAPHEVAK 79 Query: 62 LGIARTFQHVRLLPGMTVLENVALGAHMRSRQSFLSNTVNAMLHLE--RAEEQALLDEAA 119 GIARTFQ++RL MTVLENV +G H+R++Q N A+ + R EE A+ +++ Sbjct: 80 AGIARTFQNIRLFGEMTVLENVMVGCHVRTKQ----NVFGAVFRHKAAREEEAAIREKSQ 135 Query: 120 RALHRVGLQHLMHEQAGNLALGQQRILEIARALCCDPLLLLLDEPAAGLRHLEKQALSKV 179 + L VG+ A +L+ G QR LEIARAL DP LL LDEPAAG+ EK L ++ Sbjct: 136 KLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKLGLREL 195 Query: 180 LQELRADGMSILLVEHDMEFVMELTDHIVVMEFGTKIAEGTPQEIQRHPAVIEAYLG 236 L +++A+G +ILL+EHD++ +M L + I V+++G IAEG P ++Q++PAVIEAYLG Sbjct: 196 LVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKNPAVIEAYLG 252 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 699,693 Number of extensions: 28086 Number of successful extensions: 500 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 321 Number of HSP's successfully gapped: 146 Length of query: 239 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 157 Effective length of database: 1,231,600 Effective search space: 193361200 Effective search space used: 193361200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)