BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0084.p
         (183 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313302|ref|YP_003777394.1| hypothetical protein Hsero_4015...   338   1e-94

>gi|300313302|ref|YP_003777394.1| hypothetical protein Hsero_4015
           [Herbaspirillum seropedicae SmR1]
          Length = 183

 Score =  338 bits (867), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 176/183 (96%), Positives = 179/183 (97%)

Query: 1   MRKIFLLLAALTLSFQVHAASDADNTTLVPPQPKLAFLARFSVDLVAPIWELGKTSDLGR 60
           M+K+FLLLAAL LS Q HAASDADNTTL PPQPKLAFLARFSVDLVAPIWELGKTSDLGR
Sbjct: 1   MKKLFLLLAALILSLQAHAASDADNTTLTPPQPKLAFLARFSVDLVAPIWELGKTSDLGR 60

Query: 61  RRIIPITGGSFKGPLINGEILNNGADWQTVTADGLAIIDTRYLLKLDDGELVYLQTRGVR 120
           RRIIPITGGSFKGPLINGEILNNGADWQTVTADGLA+IDTRYLLKLDDGELVYLQTRGVR
Sbjct: 61  RRIIPITGGSFKGPLINGEILNNGADWQTVTADGLALIDTRYLLKLDDGELVYLQTRGVR 120

Query: 121 YGPPEVMAEVAKGKPVDPSRYTFRLFMNFETASKKYDWLNRAMGVGYAMRLGNAVVYDAY 180
           YGPPEVMAEVAKGKPVDPSRYTFRLFMNFETASKKYDWLNRAMGVGYAMRLGNAVVYDAY
Sbjct: 121 YGPPEVMAEVAKGKPVDPSRYTFRLFMNFETASKKYDWLNRAMGVGYAMRLGNAVVYDAY 180

Query: 181 LLN 183
           LLN
Sbjct: 181 LLN 183


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 612,882
Number of extensions: 25939
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,241,070
Effective search space: 127830210
Effective search space used: 127830210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)