BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0024.0080.p (532 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis pro... 598 e-172 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 241 2e-64 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 220 3e-58 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 216 4e-57 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 211 9e-56 >gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 507 Score = 598 bits (1542), Expect = e-172, Method: Compositional matrix adjust. Identities = 300/359 (83%), Positives = 330/359 (91%) Query: 1 MKIGTRLGGSFLLVTLLACVLITASLLTLTRIGQHWGDFSGTVLTKQDYATQGYIKLGEG 60 MKIGTRLGGSF+LVTLL C LI AS LTLT+IG+HW DFSGTVL KQDYATQGYIKLG+G Sbjct: 1 MKIGTRLGGSFMLVTLLTCALIVASTLTLTQIGRHWNDFSGTVLGKQDYATQGYIKLGDG 60 Query: 61 VQNFKNYVVRGKDYDKHFLADMDAIARLMSEYRKLGVGNPKEEELLQKISTGERNYRDAV 120 VQNFKNYVVRGKDYD+HFLADMDAI RLM +YRKLGV NPKEE LL+KIS GER YR+A+ Sbjct: 61 VQNFKNYVVRGKDYDRHFLADMDAIVRLMEQYRKLGVDNPKEEALLEKISNGERRYREAL 120 Query: 121 AKAQGMKAAGASVSEIDASISGADKVLGAGFAGLLAIARENANGTGQEISSAIRNGEAVE 180 AKAQ MKAAGAS SE+DA+ISGADKVLGAGF+GLLAIARENA TG++ISSAI G+++ Sbjct: 121 AKAQAMKAAGASPSEVDAAISGADKVLGAGFSGLLAIARENAGSTGEQISSAIGAGKSLS 180 Query: 181 LGVGAVVVLLAALLALLATRSITRPIAEAVTIAKTVAAGDLGSRIEVRRKDETGELLQAL 240 L VGA+VV+LA +LA+LATRSIT+P+ EAV IAKTVAAGDLGSRI V RKDETGELLQAL Sbjct: 181 LAVGALVVILALVLAVLATRSITQPMREAVRIAKTVAAGDLGSRIVVTRKDETGELLQAL 240 Query: 241 KEMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEETAAAMEQITSTV 300 KEMN+SLQ+VVGGVR GSDTIVTASTQIAGGNLDLSARTE+QASSLE+TAAAME+ITSTV Sbjct: 241 KEMNASLQKVVGGVREGSDTIVTASTQIAGGNLDLSARTEEQASSLEQTAAAMEEITSTV 300 Query: 301 RRNADHARQANAMAGSVSAVASRSGLVVSDVVSTMEEIQASAREIADIISVIDGIAFQT 359 RRNADHARQANAMAGSVS VASRSGLVVSDVV TM+EIQASAREI +IISVIDGIAFQT Sbjct: 301 RRNADHARQANAMAGSVSEVASRSGLVVSDVVGTMDEIQASAREIEEIISVIDGIAFQT 359 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 241 bits (614), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 159/368 (43%), Positives = 227/368 (61%), Gaps = 11/368 (2%) Query: 1 MKIGTRLGGSFLLVTLLACVLITASLLTLTRIGQHWGDFSGTVLTKQDYATQGYIKLGE- 59 +KIG RL F+ + +L V++ + L IG D + L K+ A Q + + E Sbjct: 4 LKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAIKEN 63 Query: 60 GVQNFKNYVVRGKD--YDKHFLADMDAIARLMSEYRK---LGVGNPKEEELLQKISTGER 114 GV+ F V++ D + +F +DA + +S+ +K + + +E+ L ++ Sbjct: 64 GVRTFA--VMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLRA 121 Query: 115 NYRDAVAKAQGMKAAGASVSEIDASISGADKVLGAGFAGLLAIA---RENANGTGQEISS 171 YR +K AG + + + K++ G+L A ++ + T I+ Sbjct: 122 AYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAINR 181 Query: 172 AIRNGEAVELGVGAVVVLLAALLALLATRSITRPIAEAVTIAKTVAAGDLGSRIEVRRKD 231 R+G ++ L +GA+ ++L A LA L TRSITRP+ +AVTIA+TVAAGDL SRI+ +D Sbjct: 182 DYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSRD 241 Query: 232 ETGELLQALKEMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEETAA 291 ETG+LL ALK MN +L +VG VR G++TI TAS +IA GNLDLSARTE QA SLEETA+ Sbjct: 242 ETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETAS 301 Query: 292 AMEQITSTVRRNADHARQANAMAGSVSAVASRSGLVVSDVVSTMEEIQASAREIADIISV 351 AMEQ+TSTV++NAD+ARQAN +A S S VA++ G VV VV+TM I AS+++IADII V Sbjct: 302 AMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIGV 361 Query: 352 IDGIAFQT 359 IDGIAFQT Sbjct: 362 IDGIAFQT 369 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 220 bits (560), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 153/384 (39%), Positives = 222/384 (57%), Gaps = 40/384 (10%) Query: 1 MKIGTRLGGSFLLVTLLACVLITASLLTLTRIGQHWGDFSGTVLTKQDYATQGYIK-LGE 59 +KIGTRL F LV + +L++ + R+G + L Y + ++ + E Sbjct: 6 LKIGTRLYMGFGLVAAILVILVSVAYTNFARLG------AANELNVHTYEVRAQLRAMAE 59 Query: 60 GVQNFKN----YVVRGKDYD-KHFLADMDAIARLMSEYRKLGVGNPKEEELLQKISTGER 114 + N + + + G D + + M + + R L N +++ LQ++S E+ Sbjct: 60 SLINIETGQRGFSLSGIDASLEPYHLGMTTFKTALEKTRTLTSDNTLQQQRLQELSDSEQ 119 Query: 115 NY------------------RDAVAKAQGMKAAGASVSEIDASISGADKVLGAGFAGLLA 156 + R+ +A + AG S++D+ D L + LL Sbjct: 120 RWLKSAIDPAIELRRAVREGREQMAAVVAFEQAGKGKSQMDSMRVLLDD-LDRTESALL- 177 Query: 157 IARENANGTGQEISSAIRNGEAVEL-GVGAVVVLLAALLALLATRSITRPIAEAVTIAKT 215 G E ++A+R+ + L G GA+ ++LA LLA +ITRP+A AV +A+ Sbjct: 178 -------GERAEEAAALRSVTSTTLIGGGAIALMLAVLLAWWLANNITRPLALAVQLARR 230 Query: 216 VAAGDLGSRIEVRRKDETGELLQALKEMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDL 275 VA+GDL +RIEVR +DETG LL ALK+MN SL R+V GVR G++ I TAS++IA GNLDL Sbjct: 231 VASGDLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDL 290 Query: 276 SARTEQQASSLEETAAAMEQITSTVRRNADHARQANAMAGSVSAVASRSGLVVSDVVSTM 335 S+RTEQQASSLEETA++ME++TSTV++N +AR+AN MA + S +AS G VV+ VV TM Sbjct: 291 SSRTEQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTM 350 Query: 336 EEIQASAREIADIISVIDGIAFQT 359 EEI S+R+I DIISVIDGIAFQT Sbjct: 351 EEINDSSRKIVDIISVIDGIAFQT 374 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 216 bits (549), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 152/367 (41%), Positives = 210/367 (57%), Gaps = 9/367 (2%) Query: 1 MKIGTRLGGSFLLVTLLACVLITASLLTLTRIGQHWGDFSGTVLTKQDYATQGYIKLGEG 60 MKI RLG F + ++ CV+ + L + + K TQ K+ G Sbjct: 7 MKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKVNTG 66 Query: 61 VQNFKNYVV-RGKDYDKHFLADMDAIARLMSEY---RKLGVGNPKEEELLQKISTGERNY 116 ++ +N ++ R + K +L MD +SE+ + P+ ELL + +Y Sbjct: 67 ARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQARADY 126 Query: 117 RDAVAKAQGM----KAAGASVSEIDASISGADKVLGAGFAGLLAIARENANGTGQEISSA 172 K + K A+ D +I DK A +++ + + + S+A Sbjct: 127 SKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAA-VKEMVSFQSSLMDKSAERASAA 185 Query: 173 IRNGEAVELGVGAVVVLLAALLALLATRSITRPIAEAVTIAKTVAAGDLGSRIEVRRKDE 232 + + L + V VLL+AL A+L TRSITRP+ EAV +A VAAGDL +IE KDE Sbjct: 186 SSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEATSKDE 245 Query: 233 TGELLQALKEMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQASSLEETAAA 292 TG LL ALK MN +L R+V VR G+DTI TAS +IA GNLDLS+RTEQQA +LEETA+A Sbjct: 246 TGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEETASA 305 Query: 293 MEQITSTVRRNADHARQANAMAGSVSAVASRSGLVVSDVVSTMEEIQASAREIADIISVI 352 ME++TSTVR+NAD+ARQAN +A + S VA + G VV +VV TM +I ++R+I DIISVI Sbjct: 306 MEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDIISVI 365 Query: 353 DGIAFQT 359 DGIAFQT Sbjct: 366 DGIAFQT 372 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 211 bits (538), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 151/376 (40%), Positives = 214/376 (56%), Gaps = 27/376 (7%) Query: 1 MKIGTRLGGSFLLVTLLACVLITASLLTLTRIGQHWGDFSGTVLTKQDYATQGYIKLGEG 60 M IG RL F L+ + ++ L L + Q + L + Y L G Sbjct: 7 MNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTNLVAG 66 Query: 61 VQNFKNYVVRGKDYDK----HFLADMDAIARLMSEYRKLG---VGNPKEEELLQKISTGE 113 + + + K D +F A++ A ++ EY+K + P+E+ L QKI Sbjct: 67 I---RRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGELR 123 Query: 114 RNY---RDAVAKAQGMKAAGASVSEIDASISGADKVLGAG-------FAGLLAIARENAN 163 + Y RD + KA KAAG + + ++ D+V L+ R+ + Sbjct: 124 KLYLSSRDEINKA---KAAGNT----EEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMD 176 Query: 164 GTGQEISSAIRNGEAVELGVGAVVVLLAALLALLATRSITRPIAEAVTIAKTVAAGDLGS 223 T +EI + + L + +++LL + A T IT+P+ AV +++ VA GDL S Sbjct: 177 DTAREIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSS 236 Query: 224 RIEVRRKDETGELLQALKEMNSSLQRVVGGVRTGSDTIVTASTQIAGGNLDLSARTEQQA 283 I V +DETG+LLQ+LK+MN SL+ +V VR+G+DTI TAS++IA GNLDLS+RTEQQA Sbjct: 237 EIAVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQA 296 Query: 284 SSLEETAAAMEQITSTVRRNADHARQANAMAGSVSAVASRSGLVVSDVVSTMEEIQASAR 343 SSL ETA+AME++ STVR+NAD+ARQA+ +A S SAVA + G VVS VV TM I AS+R Sbjct: 297 SSLAETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSR 356 Query: 344 EIADIISVIDGIAFQT 359 +I DIISVIDGIAFQT Sbjct: 357 KIVDIISVIDGIAFQT 372 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.131 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,218,255 Number of extensions: 40787 Number of successful extensions: 409 Number of sequences better than 1.0e-08: 65 Number of HSP's gapped: 377 Number of HSP's successfully gapped: 65 Length of query: 532 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 442 Effective length of database: 1,193,720 Effective search space: 527624240 Effective search space used: 527624240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)