BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0079.p
         (553 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768...   913   0.0  

>gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768
           [Herbaspirillum seropedicae SmR1]
          Length = 720

 Score =  913 bits (2359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/549 (78%), Positives = 485/549 (88%)

Query: 1   MLAGGNAYAATADMKVGQWNVPGYLLNAPEQMRRADIYKQFIDKLTAAVKSSQRKIVQIN 60
           ML  GN  A   D ++G+W VPGYL  APE++RR  +YK F+ KL  AVKSSQRK+VQIN
Sbjct: 168 MLQNGNVNAMPPDWQIGEWTVPGYLTTAPEKVRRLAMYKTFMQKLATAVKSSQRKVVQIN 227

Query: 61  VSVFGFSRGAAEARAFTHWLHELFTPSGGAFEIAGVPIRIGFLGIFDTVASVGIGDVTPI 120
           VSVFGFSRGAAEARA  HWLHELFTPSGGAFE+AG+PIRIGFLG+FDTVA+VGIGDVTP+
Sbjct: 228 VSVFGFSRGAAEARACCHWLHELFTPSGGAFELAGIPIRIGFLGVFDTVAAVGIGDVTPV 287

Query: 121 TFGHMAWAHNTQSILPAVEECAHFVALHEQRASFPLESSTGWKNVGYPGMHSDVGGGYLP 180
           TFGHMAWA  TQS+ PAVE+CAHFVALHEQRASFPLESSTGW NVGYPGMHSD+GGGY P
Sbjct: 288 TFGHMAWADKTQSVPPAVEQCAHFVALHEQRASFPLESSTGWTNVGYPGMHSDIGGGYFP 347

Query: 181 GEQGKSMPDWGLSPQLSQIPLIDMHFAALKGGVPLLTLAELAKDSASAKGFATDARLVKA 240
           GEQGKSMP WG SP LSQIPLIDMHF ALK GVPL T  E+  D + +  +ATD RL+K+
Sbjct: 348 GEQGKSMPSWGKSPHLSQIPLIDMHFTALKAGVPLWTTGEINADPSLSASYATDPRLIKS 407

Query: 241 YNDWLAGNGIKAGSIREFTQAHTRQYLRWRGSLHEGKGGLLLSKRFYRDAGTSDKKDLLE 300
           YNDWLA NGIKAGSIRE+T+AHTRQYLRWRGSLHEGKGGL+L KRFY+DAGTSDKKD+LE
Sbjct: 408 YNDWLATNGIKAGSIREYTEAHTRQYLRWRGSLHEGKGGLMLGKRFYQDAGTSDKKDMLE 467

Query: 301 ADVELGKMIRDWRERGNLDLDQRMGQMARKYVRRVSPLAGVLTDAAKERLTAEEKKFYDI 360
           ADVELGKMIRDWRER +L+LDQRMGQMA+KYVRRVSPL G+L   +K+RLTA+EKKFYDI
Sbjct: 468 ADVELGKMIRDWRERASLNLDQRMGQMAQKYVRRVSPLTGMLMGPSKDRLTAQEKKFYDI 527

Query: 361 MCAGPVPPAASVTLFDDYIHDSRAGFRVAGKHEPIFITGGYARFRQVFLQGEGDSATRKI 420
           MC+ P+PPAA VTLF+DY+HDSRAGFRV GKHEPIF+TGGYARFR VFLQGEGDSATRKI
Sbjct: 528 MCSDPMPPAACVTLFEDYVHDSRAGFRVMGKHEPIFLTGGYARFRHVFLQGEGDSATRKI 587

Query: 421 GELVERKVGERAADMAEDARDIKDYTVRTYDRARDRIVSGYHAVEDAAVRAKREVEDKAL 480
            ELVER VG+RAADMAEDARDIKDYTVRTYDRAR RIVSGYHAVEDAAVRAKREVE KAL
Sbjct: 588 TELVERHVGDRAADMAEDARDIKDYTVRTYDRARARIVSGYHAVEDAAVRAKREVEAKAL 647

Query: 481 AAKREIQEQAEAARKKLQAAAEAARDQASALKKKTMAEIKREADEAQRIYDAAQRHVMKK 540
           AAKREI+ QAEAAR+++QA A AA+ QA  LK KT+AEIKREADEAQRIYDAAQ+ V++K
Sbjct: 648 AAKREIEAQAEAARRQVQATAAAAKRQAVVLKDKTVAEIKREADEAQRIYDAAQKQVIRK 707

Query: 541 YEELGAMWH 549
           Y+++ A WH
Sbjct: 708 YQQMEAFWH 716


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,691,931
Number of extensions: 70491
Number of successful extensions: 216
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 463
Effective length of database: 1,193,720
Effective search space: 552692360
Effective search space used: 552692360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)