BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0078.p
         (146 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310101|ref|YP_003774193.1| hypothetical protein Hsero_0766...   210   4e-56
gi|300310099|ref|YP_003774191.1| hypothetical protein Hsero_0764...   123   7e-30

>gi|300310101|ref|YP_003774193.1| hypothetical protein Hsero_0766
           [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score =  210 bits (534), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 99/145 (68%), Positives = 117/145 (80%)

Query: 2   HERWQKKIFFPQWALVLGMVFLLAMSCPRAHAQTNDDLKALVAHLKFVIPDETALVEPKK 61
           HE W ++    Q  L +G+  LL +S   A AQTN DLKALV HLKFVIPDETALV+P++
Sbjct: 20  HEHWMRRTALLQAVLAMGLALLLCLSTFSARAQTNPDLKALVDHLKFVIPDETALVDPQQ 79

Query: 62  LERFVAQYQKRAVSAGLKDIDRQTAYVLLALYTSGKGLEQPEFKQVMAHPPASSDAFSDA 121
           LERFVAQYQKRA +AGL+DIDRQTAYVL+ALYTSGKG+E+PEFK+VM HPPAS+D FSDA
Sbjct: 80  LERFVAQYQKRAAAAGLRDIDRQTAYVLVALYTSGKGVERPEFKKVMEHPPASADEFSDA 139

Query: 122 LIGLPQRVYDSGQPLWENAVNGGSR 146
           +IGLPQ VYDSG PLW+N+     R
Sbjct: 140 MIGLPQSVYDSGTPLWDNSAYAKGR 164


>gi|300310099|ref|YP_003774191.1| hypothetical protein Hsero_0764
           [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  123 bits (308), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 75/102 (73%)

Query: 38  DLKALVAHLKFVIPDETALVEPKKLERFVAQYQKRAVSAGLKDIDRQTAYVLLALYTSGK 97
           DL  LV HLKFVIPDET  + P+ L  FVA+YQ+ AV+AGL DIDRQ  YVLLALYTSG+
Sbjct: 204 DLDTLVNHLKFVIPDETRKLAPRTLLDFVAKYQQEAVAAGLDDIDRQAQYVLLALYTSGR 263

Query: 98  GLEQPEFKQVMAHPPASSDAFSDALIGLPQRVYDSGQPLWEN 139
           G   P  + +MA PPAS DA+ +A+  +P+ V+++G PLWE 
Sbjct: 264 GTAHPLMQALMADPPASLDAYYEAIQAMPEEVWEAGAPLWEQ 305


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 487,247
Number of extensions: 18641
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 146
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,255,275
Effective search space: 86613975
Effective search space used: 86613975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)