BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0077.p
         (306 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310099|ref|YP_003774191.1| hypothetical protein Hsero_0764...   441   e-125
gi|300310101|ref|YP_003774193.1| hypothetical protein Hsero_0766...   121   7e-29

>gi|300310099|ref|YP_003774191.1| hypothetical protein Hsero_0764
           [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  441 bits (1133), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/300 (71%), Positives = 244/300 (81%)

Query: 4   DPLALLHWAQACRERGHHAFLLLDTAQAEASHLKLQSMHVPYASLFEGKREEALPEIVPL 63
           DPL L  WA  C +RGH A+LLLD+AQAE SHLKLQ+M +PYASLF+GKREEALPEI PL
Sbjct: 7   DPLGLQAWALECADRGHGAYLLLDSAQAEGSHLKLQAMRLPYASLFDGKREEALPEIAPL 66

Query: 64  LLPLSGLDEQRALVLVRWVSQLGFAAPCLSWYESTLGLHDFAAHLRNFHHAGLSDGQAMM 123
           L+ LSGLD  R   L  W+SQL F+APCLSWYES L L  FAAHLRNFH  GLSDGQAMM
Sbjct: 67  LISLSGLDAPRRERLASWISQLAFSAPCLSWYESPLPLQAFAAHLRNFHQVGLSDGQAMM 126

Query: 124 MRWYDTRILPIWMQALTKDQLALFTGGMLSLAFVDRFGEARTLYQSEQVQPPSQALPLDA 183
           MRWYDTRILPIW QALT +Q +LFTGGM S+A+VDRFGEA+T++Q+ +  PPS   PLD 
Sbjct: 127 MRWYDTRILPIWAQALTPEQRSLFTGGMFSIAYVDRFGEAKTIHQASEAGPPSAPPPLDQ 186

Query: 184 PLVTLDDRQFGLLVDAGDLDALLTHLRFVIPDETNALPPRTLVEFVAAYQQRAREAGVDD 243
           PLVTLDD+QFGLLVDAGDLD L+ HL+FVIPDET  L PRTL++FVA YQQ A  AG+DD
Sbjct: 187 PLVTLDDQQFGLLVDAGDLDTLVNHLKFVIPDETRKLAPRTLLDFVAKYQQEAVAAGLDD 246

Query: 244 IDRQTQYVLLALYTSGAGVEHPAVKALMQNPPDSLAGYFDALQAMPEEVWEAGPPLWENE 303
           IDRQ QYVLLALYTSG G  HP ++ALM +PP SL  Y++A+QAMPEEVWEAG PLWE E
Sbjct: 247 IDRQAQYVLLALYTSGRGTAHPLMQALMADPPASLDAYYEAIQAMPEEVWEAGAPLWEQE 306


>gi|300310101|ref|YP_003774193.1| hypothetical protein Hsero_0766
           [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score =  121 bits (304), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 58/106 (54%), Positives = 76/106 (71%)

Query: 201 DLDALLTHLRFVIPDETNALPPRTLVEFVAAYQQRAREAGVDDIDRQTQYVLLALYTSGA 260
           DL AL+ HL+FVIPDET  + P+ L  FVA YQ+RA  AG+ DIDRQT YVL+ALYTSG 
Sbjct: 56  DLKALVDHLKFVIPDETALVDPQQLERFVAQYQKRAAAAGLRDIDRQTAYVLVALYTSGK 115

Query: 261 GVEHPAVKALMQNPPDSLAGYFDALQAMPEEVWEAGPPLWENEHVA 306
           GVE P  K +M++PP S   + DA+  +P+ V+++G PLW+N   A
Sbjct: 116 GVERPEFKKVMEHPPASADEFSDAMIGLPQSVYDSGTPLWDNSAYA 161


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,036,065
Number of extensions: 42929
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 2
Length of query: 306
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,217,395
Effective search space: 269044295
Effective search space used: 269044295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)