BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0075.p
         (451 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768...    84   3e-17

>gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768
           [Herbaspirillum seropedicae SmR1]
          Length = 720

 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 88/183 (48%), Gaps = 27/183 (14%)

Query: 130 KVQRIQVSVFGADRGCVIARAFVNELARLYKRANEQDLAIEGNPIEIKFLGLLDSVASIM 189
           KV +I VSVFG  RG   ARA  + L  L+  +      + G PI I FLG+ D+VA++ 
Sbjct: 222 KVVQINVSVFGFSRGAAEARACCHWLHELFTPSGGA-FELAGIPIRIGFLGVFDTVAAV- 279

Query: 190 EENKIVGLLPLAGSIKQNYGDRSLAIPPAVQRCVHFAAAHELRFYQRLDSLEKTRGEQYL 249
               I  + P+       + D++ ++PPAV++C HF A HE R    L+S   T      
Sbjct: 280 ---GIGDVTPVTFG-HMAWADKTQSVPPAVEQCAHFVALHEQRASFPLES--STGWTNVG 333

Query: 250 YPGTSEDVTGGAPDGMLNFRGE-------------LQRVPLRDMLHEALISGVMMDRMED 296
           YPG   D+ GG       F GE             L ++PL DM   AL +GV +    +
Sbjct: 334 YPGMHSDIGGG------YFPGEQGKSMPSWGKSPHLSQIPLIDMHFTALKAGVPLWTTGE 387

Query: 297 LNA 299
           +NA
Sbjct: 388 INA 390


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,230,337
Number of extensions: 46246
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 363
Effective length of database: 1,203,190
Effective search space: 436757970
Effective search space used: 436757970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)