BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0072.p
         (316 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310099|ref|YP_003774191.1| hypothetical protein Hsero_0764...   227   9e-61
gi|300310101|ref|YP_003774193.1| hypothetical protein Hsero_0766...    62   4e-11

>gi|300310099|ref|YP_003774191.1| hypothetical protein Hsero_0764
           [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  227 bits (579), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 124/285 (43%), Positives = 170/285 (59%), Gaps = 6/285 (2%)

Query: 24  FALLDSAPVEGAFRQRPLQGQR--FASLFEGRQEAVLPEIAPLLIDLDSAQGSSLQRLCE 81
           + LLDSA  EG+  +  LQ  R  +ASLF+G++E  LPEIAPLLI L        +RL  
Sbjct: 26  YLLLDSAQAEGSHLK--LQAMRLPYASLFDGKREEALPEIAPLLISLSGLDAPRRERLAS 83

Query: 82  WLWSIGLEHPCLSWMASPLPLDALAAHLRLFHTVDLSEGQTMLLRWYDTRILPQWLGCLT 141
           W+  +    PCLSW  SPLPL A AAHLR FH V LS+GQ M++RWYDTRILP W   LT
Sbjct: 84  WISQLAFSAPCLSWYESPLPLQAFAAHLRNFHQVGLSDGQAMMMRWYDTRILPIWAQALT 143

Query: 142 PQQHAQFCAPLVSLSCLDRTARVQTFFQDRQAEHIAPLSEPALGRSLVQLDDRQLAQLMH 201
           P+Q + F   + S++ +DR    +T  Q  +A    P + P L + LV LDD+Q   L+ 
Sbjct: 144 PEQRSLFTGGMFSIAYVDRFGEAKTIHQASEAG--PPSAPPPLDQPLVTLDDQQFGLLVD 201

Query: 202 ASQVDILINRLQLLIAPELARVARGRLAAFLQAHVDQLCAAGIDDTERQLLCLLPALYTS 261
           A  +D L+N L+ +I  E  ++A   L  F+  +  +  AAG+DD +RQ   +L ALYTS
Sbjct: 202 AGDLDTLVNHLKFVIPDETRKLAPRTLLDFVAKYQQEAVAAGLDDIDRQAQYVLLALYTS 261

Query: 262 GAAWLHPVFASLLQAPPVGFKAFAAAIQELPDEIYAGDLPLWEKE 306
           G    HP+  +L+  PP    A+  AIQ +P+E++    PLWE+E
Sbjct: 262 GRGTAHPLMQALMADPPASLDAYYEAIQAMPEEVWEAGAPLWEQE 306


>gi|300310101|ref|YP_003774193.1| hypothetical protein Hsero_0766
           [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%)

Query: 208 LINRLQLLIAPELARVARGRLAAFLQAHVDQLCAAGIDDTERQLLCLLPALYTSGAAWLH 267
           L++ L+ +I  E A V   +L  F+  +  +  AAG+ D +RQ   +L ALYTSG     
Sbjct: 60  LVDHLKFVIPDETALVDPQQLERFVAQYQKRAAAAGLRDIDRQTAYVLVALYTSGKGVER 119

Query: 268 PVFASLLQAPPVGFKAFAAAIQELPDEIYAGDLPLWEK 305
           P F  +++ PP     F+ A+  LP  +Y    PLW+ 
Sbjct: 120 PEFKKVMEHPPASADEFSDAMIGLPQSVYDSGTPLWDN 157


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,091,941
Number of extensions: 47143
Number of successful extensions: 166
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 2
Length of query: 316
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,217,395
Effective search space: 281218245
Effective search space used: 281218245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)