BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0071.p
         (169 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspiri...   268   2e-73
gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri...    67   6e-13
gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri...    54   8e-09

>gi|300310098|ref|YP_003774190.1| VGR-related protein
           [Herbaspirillum seropedicae SmR1]
          Length = 982

 Score =  268 bits (684), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 143/169 (84%), Positives = 156/169 (92%)

Query: 1   MGVVAGQHLQLANGETVSLMSGHDSQHVSGNQLRMRSGQALGVLAGAVAAGEGGTGLQMI 60
           +G VAGQH+QLANGETV+L+SG DSQ V+GNQ R+RSGQALGVLAGA+AAGEGGTGLQMI
Sbjct: 814 LGAVAGQHMQLANGETVNLLSGADSQQVAGNQYRLRSGQALGVLAGAMAAGEGGTGLQMI 873

Query: 61  AAQKNIDVQAQADTLAVQARDQVSVVSANASVDWAAAKKITLSTAGGANITIEGGNITVQ 120
           AAQKNIDVQAQAD L VQARDQV V+SANA VDWAAAKKITLSTAGGANITIEGGNITVQ
Sbjct: 874 AAQKNIDVQAQADGLTVQARDQVRVISANAGVDWAAAKKITLSTAGGANITIEGGNITVQ 933

Query: 121 CPGKLTIHAAQKLFQGPVRQEVPMPALPNSVCKECILAAMKQGAPGVLV 169
           CPGKLTIHAAQKLF GPV + +P+P +PNSVCK+CIL AMKQGAPGVLV
Sbjct: 934 CPGKLTIHAAQKLFAGPVSKTLPLPQMPNSVCKDCILNAMKQGAPGVLV 982


>gi|300310071|ref|YP_003774163.1| VGR-related protein
           [Herbaspirillum seropedicae SmR1]
          Length = 954

 Score = 67.4 bits (163), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 4/113 (3%)

Query: 56  GLQMIAAQKNIDVQAQADTLAVQARDQVSVVSANASVDWAAAKKITLSTAGGANITIEGG 115
           G+Q  AA   + +QA  D L + A   V+V S N S++  A +KI L  AG A++T+EGG
Sbjct: 793 GIQAFAANGPVSLQAHTDALEILADKDVTVTSVNDSIEIKARQKIVLQ-AGQASVTLEGG 851

Query: 116 NITVQCPGKLTIHAAQKLFQGPVRQEVPMPALPNSVCK---ECILAAMKQGAP 165
           NIT  CPG  ++  A   F G       + ALP++  K   E  +     G P
Sbjct: 852 NITFACPGTFSVKGATHAFPGGASVSPDLMALPDTKYKLFDEAFVVKDPNGTP 904


>gi|300310274|ref|YP_003774366.1| VGR-related protein
           [Herbaspirillum seropedicae SmR1]
          Length = 928

 Score = 53.5 bits (127), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 8/150 (5%)

Query: 1   MGVVAGQHLQLANGETVSLMSGHDSQHVSGNQLRMRSGQALGVLAGAVAAGEGGTGLQMI 60
           +G+   Q  Q+ + +  +L SG D+   SG  L       L  +   ++      G+++ 
Sbjct: 689 IGLATDQGTQVHSAQETTLTSGKDTSIASGKSL-------LATVKEKISLFAQNAGMKLF 741

Query: 61  AAQKNIDVQAQADTLAVQARDQVSVVSANASVDWAAAKKITLSTAGGANITIEGGNITVQ 120
           AA+  +++QAQ+D L + A     ++S +  V+  A  ++ +S AGG+ I I    IT  
Sbjct: 742 AAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMIS-AGGSFIQINSAGITQG 800

Query: 121 CPGKLTIHAAQKLFQGPVRQEVPMPALPNS 150
            PGK    A+     GP  Q   MP +  S
Sbjct: 801 TPGKWEAKASLHSMPGPASQNFVMPHVQKS 830


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 440,298
Number of extensions: 13531
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 5
Length of query: 169
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,245,805
Effective search space: 112122450
Effective search space used: 112122450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)