BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0067.p
         (279 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313313|ref|YP_003777405.1| peptidase M15B and M15C, D,D-ca...   500   e-143
gi|300310096|ref|YP_003774188.1| transmembrane protein [Herbaspi...   431   e-122

>gi|300313313|ref|YP_003777405.1| peptidase M15B and M15C,
           D,D-carboxypeptidase VanY/endolysins protein
           [Herbaspirillum seropedicae SmR1]
          Length = 279

 Score =  500 bits (1287), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 235/279 (84%), Positives = 257/279 (92%)

Query: 1   VLFLLIAAYLLITGFAMWLLLFPSGRVLTLRFLHARLAGLRSRWERWNRRGDEVIAGTTS 60
           ++FLLIA YLL++G AMWLLLFPSGR  TLRFL  R + LR+RWER+N RGD++IA  TS
Sbjct: 1   MVFLLIATYLLVSGLAMWLLLFPSGRAQTLRFLQTRCSRLRNRWERYNDRGDQMIAEVTS 60

Query: 61  SVRSSLTASVDYVRNNYVIVSTIAVLLIGPAIVAFLLSGKSMLQGFDDTQRVTNSQIAEL 120
           ++RSSLT+ ++YVR NY+++S I  LLIGPAIVA LL+GKSMLQGFDDTQR TNSQIAEL
Sbjct: 61  NIRSSLTSRLNYVRKNYLVLSIIVALLIGPAIVALLLAGKSMLQGFDDTQRATNSQIAEL 120

Query: 121 LKGEQLVPPPPLPPDMFTTAEVIQVRPMLVNASRNWQLLNPEYAQRLLLVFKIMKEKHGY 180
           LKGEQLV PPPLPPDMFTTAEV+QVRPMLV+ASRNWQLLNPEYAQRLLLVFKIMKEKHGY
Sbjct: 121 LKGEQLVAPPPLPPDMFTTAEVVQVRPMLVDASRNWQLLNPEYAQRLLLVFKIMKEKHGY 180

Query: 181 EMALIEGYRSPERQNMLAGMGSNVTNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAM 240
           EMALIEGYRSP+RQNMLAGMG  +TNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAM
Sbjct: 181 EMALIEGYRSPQRQNMLAGMGGGITNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAM 240

Query: 241 EGYRLYGEVAESVGLTWGGRWKLMDFGHTEYRMPGVMKK 279
            GYRLYGEVAESVGLTWGGRWKLMDFGHTEYRMPGVMKK
Sbjct: 241 AGYRLYGEVAESVGLTWGGRWKLMDFGHTEYRMPGVMKK 279


>gi|300310096|ref|YP_003774188.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 279

 Score =  431 bits (1108), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/268 (83%), Positives = 243/268 (90%)

Query: 12  ITGFAMWLLLFPSGRVLTLRFLHARLAGLRSRWERWNRRGDEVIAGTTSSVRSSLTASVD 71
           +T FAMWLLLFPSGR LTL FL++R+A LR RW+RWNR+GD V+AGT S +R S +AS+ 
Sbjct: 12  VTCFAMWLLLFPSGRELTLAFLNSRMASLRQRWDRWNRKGDAVLAGTASGIRHSFSASIG 71

Query: 72  YVRNNYVIVSTIAVLLIGPAIVAFLLSGKSMLQGFDDTQRVTNSQIAELLKGEQLVPPPP 131
           YVR NYVIV  + +LLIGPAI+AF+LSGKSML GF+   RV N+QIAELLKGE LVPPPP
Sbjct: 72  YVRGNYVIVGLVLLLLIGPAILAFMLSGKSMLGGFEPADRVANAQIAELLKGELLVPPPP 131

Query: 132 LPPDMFTTAEVIQVRPMLVNASRNWQLLNPEYAQRLLLVFKIMKEKHGYEMALIEGYRSP 191
           LPPDMFTTAEV+QVRPMLV+ASRNWQLLNPEYAQRLLLVFKIMKEK+G EMALIEGYRSP
Sbjct: 132 LPPDMFTTAEVVQVRPMLVDASRNWQLLNPEYAQRLLLVFKIMKEKYGIEMALIEGYRSP 191

Query: 192 ERQNMLAGMGSNVTNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAMEGYRLYGEVAE 251
           ERQNMLAGMG NVTNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAME YR YGEVAE
Sbjct: 192 ERQNMLAGMGGNVTNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAMEAYRHYGEVAE 251

Query: 252 SVGLTWGGRWKLMDFGHTEYRMPGVMKK 279
           SVGLTWGGRWKLMDFGHTEYR+PGVMKK
Sbjct: 252 SVGLTWGGRWKLMDFGHTEYRLPGVMKK 279


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 840,648
Number of extensions: 31828
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,222,130
Effective search space: 238315350
Effective search space used: 238315350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)