BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0065.p
         (432 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310094|ref|YP_003774186.1| hypothetical protein Hsero_0759...   414   e-117

>gi|300310094|ref|YP_003774186.1| hypothetical protein Hsero_0759
           [Herbaspirillum seropedicae SmR1]
          Length = 508

 Score =  414 bits (1065), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/395 (55%), Positives = 280/395 (70%), Gaps = 1/395 (0%)

Query: 6   HSPERKWTLAIVATALRSPFGADAADLLEQIKSQSVRLPLDGELVNDQGMPILAGRISDI 65
           H  ER WTL I A+ALRSP G DAA LL Q++ Q  RL LD EL + QG PILAGRI  +
Sbjct: 90  HHVERHWTLVIAASALRSPQGDDAATLLSQLQKQDARLDLDPELTDRQGFPILAGRIGAL 149

Query: 66  QGEETREIYQAWQQQHFPEQALTPQ-DNAHWRSLALAADIARELGDRLHWHPLLEEYQDA 124
             E  +  Y AW +   PE A  P     H R+LALAADI RELG RL  HP L +Y +A
Sbjct: 150 DVEGAQSDYLAWLEAQSPEAAQAPTLATGHLRTLALAADITRELGQRLLAHPFLTQYLEA 209

Query: 125 PRHRQEEVGLPHLHLLVLLPPTWSGEQRMQAARWLGEQVCQQGWPPEKLNVLPAAAGENA 184
           P H++E VGLP +HLL LLP  W G QR+QAA+WLG+ + Q+GWP EK+ VLP  AGE+ 
Sbjct: 210 PAHQREAVGLPQVHLLALLPARWEGAQRLQAAQWLGDLLAQEGWPREKITVLPVIAGESV 269

Query: 185 HPLLHLDRLVATSRDPRTQQPSPYLASSYLAMVIAAQSNLDPEIVQAWQQDKQLLQGAQS 244
           HP+LHLDRL+ATSRD   +QP+  L S YLA+ +AA+S+LD  IV+ W+  +QLL  + +
Sbjct: 270 HPMLHLDRLIATSRDVNAKQPTSQLTSPYLAVAVAAESSLDDAIVEEWETQQQLLCSSAN 329

Query: 245 IGKSPAEAAAGLILADTTQALAMGTADPVLLHRASLGRHERSVDQARRVPGDLLIQLAQG 304
            GKSP E AAGLILAD TQA+A+G    VLLHRA++GR ++S D   R+ G+ L +L QG
Sbjct: 330 TGKSPGEGAAGLILADATQAIALGADTLVLLHRAAVGRKDKSADAPGRIEGEFLSRLVQG 389

Query: 305 ALRDAAIVPDQLALLISDGDYRASRTDEIMKLGYAVLPELDLGSQCVKLGASCGSAGLAT 364
           AL+DA + P  + LL +D DYR SRT+EIMK+GY  LPE+DLGSQCVKLGA CG+AG AT
Sbjct: 390 ALQDAGVAPAAIGLLATDSDYRGSRTEEIMKMGYDSLPEIDLGSQCVKLGAGCGAAGAAT 449

Query: 365 ALSALVLAHAATDDSDQPSLCVCNEDAHQRAVVAL 399
            +SALVLAH+A++   Q +LCV N+ AH+RA + +
Sbjct: 450 VMSALVLAHSASEALGQAALCVSNDHAHERAAMVV 484


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,220,949
Number of extensions: 49684
Number of successful extensions: 215
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 344
Effective length of database: 1,203,190
Effective search space: 413897360
Effective search space used: 413897360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)